Traes_4BL_BE10705D5 (Triticum aestivum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Traes_4BL_BE10705D5 T224204_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.688 0.614
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.688 0.614
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.688 0.614
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.688 0.614
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.674 0.649
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.674 0.632
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.674 0.632
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.674 0.632
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.674 0.596
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.662 0.632
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.662 0.632
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.662 0.632
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.662 0.632
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.657 0.667
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.657 0.667
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.657 0.632
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.657 0.632
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.652 0.614
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.652 0.614
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.644 0.561
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.644 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_4BL_BE10705D5.2 Homeodomain 60 116

Links

Other Homeodomain family TFs
Other Triticum aestivum TFs

716 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30099.m001672 Ricinus communis 30099.m001672 N
AGL62 Arabidopsis thaliana AT5G60440 I
Bo1g112460 Brassica oleracea Bo1g112460 N
Bo5g113750 Brassica oleracea Bo5g113750 N
Bo9g142570 Brassica oleracea Bo9g142570 N
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N
Bra002480 Brassica rapa Bra002480 N
Bra022434 Brassica rapa Bra022434 N
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N
Carubv10028580m.g Capsella rubella Carubv10028580m.g N
cassava21387.m1 Manihot esculenta cassava21387.m1 N
cassava33542.m1 Manihot esculenta cassava33542.m1 N
Ca_04659 Cicer arietinum Ca_04659 N
Ca_04660 Cicer arietinum Ca_04660 N
Ca_04661 Cicer arietinum Ca_04661 N
Ca_04662 Cicer arietinum Ca_04662 N
Ca_04665 Cicer arietinum Ca_04665 N
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N
Cla006571 Citrullus lanatus Cla006571 N
Cucsa.298560 Cucumis sativus Cucsa.298560 N
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N
GLYMA02G30990 Glycine max GLYMA02G30990 N
GLYMA02G35080 Glycine max GLYMA02G35080 N
GLYMA10G10295 Glycine max GLYMA10G10295 N
GLYMA10G10610 Glycine max GLYMA10G10610 N
GLYMA10G10640 Glycine max GLYMA10G10640 N
GLYMA10G10690 Glycine max GLYMA10G10690 N
GLYMA10G10770 Glycine max GLYMA10G10770 N
GLYMA10G10840 Glycine max GLYMA10G10840 N
GLYMA10G10860 Glycine max GLYMA10G10860 N
GLYMA10G10900 Glycine max GLYMA10G10900 N
GLYMA10G10920 Glycine max GLYMA10G10920 N
GLYMA10G10930 Glycine max GLYMA10G10930 N
GLYMA10G12321 Glycine max GLYMA10G12321 N
GLYMA10G40080 Glycine max GLYMA10G40080 N
GLYMA13G39016 Glycine max GLYMA13G39016 N
GLYMA20G27320 Glycine max GLYMA20G27320 N
GLYMA20G27330 Glycine max GLYMA20G27330 N
GLYMA20G27341 Glycine max GLYMA20G27341 N
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N
MDP0000233925 Malus domestica MDP0000233925 N
MDP0000278770 Malus domestica MDP0000278770 N
MDP0000434703 Malus domestica MDP0000434703 I
MTR_1g012570 Medicago truncatula MTR_1g012570 N
MTR_1g075600 Medicago truncatula MTR_1g075600 N
MTR_1g077360 Medicago truncatula MTR_1g077360 N
MTR_1g105905 Medicago truncatula MTR_1g105905 N
MTR_1g105910 Medicago truncatula MTR_1g105910 N
MTR_1g105920 Medicago truncatula MTR_1g105920 N
MTR_1g108510 Medicago truncatula MTR_1g108510 N
MTR_1g108580 Medicago truncatula MTR_1g108580 N
MTR_2g030740 Medicago truncatula MTR_2g030740 N
MTR_2g085250 Medicago truncatula MTR_2g085250 N
MTR_2g085280 Medicago truncatula MTR_2g085280 N
MTR_3g030770 Medicago truncatula MTR_3g030770 N
MTR_3g052870 Medicago truncatula MTR_3g052870 N
MTR_3g052920 Medicago truncatula MTR_3g052920 N
MTR_3g067875 Medicago truncatula MTR_3g067875 N
MTR_5g045560 Medicago truncatula MTR_5g045560 N
MTR_5g053390 Medicago truncatula MTR_5g053390 N
MTR_5g055100 Medicago truncatula MTR_5g055100 N
MTR_8g043650 Medicago truncatula MTR_8g043650 N
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N
Pm021071 Prunus mume Pm021071 N
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N
TCM_006323 Theobroma cacao TCM_006323 N
TCM_040735 Theobroma cacao TCM_040735 N
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N