YQE_01521 (Dendroctonus ponderosae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 YQE_01521 T224774_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.982
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.965
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.965
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.965
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.965
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.965
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.965
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.965
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.965
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.965
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.965
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.965
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.947
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENN82102 Homeodomain 171 227

Links

Other Homeodomain family TFs
Other Dendroctonus ponderosae TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY46 Arabidopsis thaliana AT2G46400 D 0.000
BGIOSGA023706 Oryza indica BGIOSGA023706 I 0.000
Bo4g101290 Brassica oleracea Bo4g101290 I 0.000
Bostr.13158s0168 Boechera stricta Bostr.13158s0168 I 0.000
Bostr.25993s0129 Boechera stricta Bostr.25993s0129 I 0.000
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I 0.000
Bra014426 Brassica rapa Bra014426 I 0.000
BRADI1G17660 Brachypodium distachyon BRADI1G17660 I 0.000
BRADI2G53520 Brachypodium distachyon BRADI2G53520 I 0.000
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N 0.000
Cagra.0050s0059 Capsella grandiflora Cagra.0050s0059 I 0.000
Cagra.0483s0080 Capsella grandiflora Cagra.0483s0080 I 0.000
Carubv10019489m.g Capsella rubella Carubv10019489m.g I 0.000
Carubv10023578m.g Capsella rubella Carubv10023578m.g I 0.000
Cla021486 Citrullus lanatus Cla021486 I 0.000
Cucsa.259110 Cucumis sativus Cucsa.259110 I 0.000
F775_02479 Aegilops tauschii F775_02479 N 0.000
F775_15928 Aegilops tauschii F775_15928 I 0.000
F775_21933 Aegilops tauschii F775_21933 I 0.000
fgenesh1_pm.C_scaffold_5002145 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5002145 I 0.000
GRMZM2G381378 Zea mays GRMZM2G381378 I 0.000
LPERR01G30500 Leersia perrieri LPERR01G30500 I 0.000
LPERR07G23280 Leersia perrieri LPERR07G23280 I 0.000
MLOC_78461 Hordeum vulgare MLOC_78461 I 0.000
OB01G44170 Oryza brachyantha OB01G44170 I 0.000
OB03G26140 Oryza brachyantha OB03G26140 I 0.000
OB07G31890 Oryza brachyantha OB07G31890 I 0.000
OBART07G26430 Oryza barthii OBART07G26430 I 0.000
OGLUM07G26470 Oryza glumaepatula OGLUM07G26470 I 0.000
OLONG_008209 Oryza longistaminata OLONG_008209 I 0.000
OMERI07G23060 Oryza meridionalis OMERI07G23060 I 0.000
ONIVA07G26140 Oryza nivara ONIVA07G26140 I 0.000
OPUNC01G34300 Oryza punctata OPUNC01G34300 I 0.000
OPUNC07G24890 Oryza punctata OPUNC07G24890 I 0.000
ORGLA07G0207800 Oryza glaberrima ORGLA07G0207800 I 0.000
ORUFI07G27440 Oryza rufipogon ORUFI07G27440 I 0.000
OS07G0680400 Oryza sativa OS07G0680400 I 0.000
Pavir.Ba00227 Panicum virgatum Pavir.Ba00227 I 0.000
Pavir.Bb03750 Panicum virgatum Pavir.Bb03750 N 0.000
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I 0.000
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I 0.000
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I 0.000
Pavir.J05812 Panicum virgatum Pavir.J05812 I 0.000
Pavir.J34713 Panicum virgatum Pavir.J34713 N 0.000
Pavir.J39511 Panicum virgatum Pavir.J39511 I 0.000
Sb02g043030 Sorghum bicolor Sb02g043030 I 0.000
Si010764m.g Setaria italica Si010764m.g N 0.000
Si019098m.g Setaria italica Si019098m.g N 0.000
Si030395m.g Setaria italica Si030395m.g I 0.000
TRIUR3_06813 Triticum urartu TRIUR3_06813 I 0.000
TRIUR3_26571 Triticum urartu TRIUR3_26571 N 0.000
TRIUR3_26595 Triticum urartu TRIUR3_26595 N 0.000