Gfo_R002462 (Geospiza fortis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gfo_R002462 T226167_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PITX2
M00313_2.00
Homo sapiens
NWAAKHYN

NRDMTTWN
PBM
Barrera et al.(2016)
PITX2_REF
0.867 1.000
Pitx3
M00428_2.00
Mus musculus
NTAAKCYN

NRGMTTAN
PBM
Berger et al.(2008)
Pitx3_3497
0.867 1.000
Pitx2
M00440_2.00
Mus musculus
NTAATCCN

NGGATTAN
PBM
Berger et al.(2008)
Pitx2_2274
0.867 1.000
PITX3
M03111_2.00
Homo sapiens
NHTAATCCN

NGGATTADN
SELEX
Jolma et al.(2013)
PITX3_1
0.867 1.000
PITX2
M05229_2.00
Homo sapiens
NTAAKCCN

NGGMTTAN
SELEX
Yin et al.(2017)
PITX2_eDBD_HT-SELEX
0.867 1.000
PITX2
M05231_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX2_FL_HT-SELEX
0.867 1.000
PITX3
M04997_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX3_eDBD_HT-SELEX
0.867 1.000
PITX2
M10720_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX2_Q2
0.867 1.000
PITX2
M10721_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX2_Q4
0.867 1.000
PITX2
M10722_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX2_Q6
0.867 1.000
PITX3
M10660_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX3_Q2
0.867 1.000
PITX3
M10661_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX3_Q3_01
0.867 1.000
PITX3
M10662_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX3_Q3
0.867 1.000
PITX2
M00314_2.00
Homo sapiens
NTAATMYN

NRKATTAN
PBM
Barrera et al.(2016)
PITX2_T114P
0.867 1.000
PITX2
M05230_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
PITX2_eDBD_Methyl-HT-SELEX
0.867 1.000
PITX2
M05232_2.00
Homo sapiens
YTAATCCY

RGGATTAR
SELEX
Yin et al.(2017)
PITX2_FL_Methyl-HT-SELEX
0.867 1.000
PITX3
M04998_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX3_eDBD_Methyl-HT-SELEX
0.867 1.000
PITX2
M00310_2.00
Homo sapiens
HTAATCYN

NRGATTAD
PBM
Barrera et al.(2016)
PITX2_L100Q
0.867 0.982
Pitx1
M00415_2.00
Mus musculus
NTAATCYNN

NNRGATTAN
PBM
Berger et al.(2008)
Pitx1_2312
0.867 0.965
PITX1
M03082_2.00
Homo sapiens
NHTAATCCN

NGGATTADN
SELEX
Jolma et al.(2013)
PITX1_1
0.867 0.965
PITX1
M03083_2.00
Homo sapiens
NHTAATCCN

NGGATTADN
SELEX
Jolma et al.(2013)
PITX1_2
0.867 0.965
PITX1
M03084_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Jolma et al.(2013)
PITX1_3
0.867 0.965
PITX1
M04928_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX1_eDBD_HT-SELEX
0.867 0.965
PITX1
M04930_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX1_FL_HT-SELEX
0.867 0.965
Pitx1
M09182_2.00
Mus musculus
NYWAAKCCYH

DRGGMTTWRN
Misc
Kulakovskiy et al.(2013)
PITX1_MOUSE.H11MO.0.C
0.867 0.965
PITX1
M10640_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX1_Q4
0.867 0.965
PITX1
M10641_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX1_Q6
0.867 0.965
PITX1
M04929_2.00
Homo sapiens
NTAAKCCN

NGGMTTAN
SELEX
Yin et al.(2017)
PITX1_eDBD_Methyl-HT-SELEX
0.867 0.965
PITX1
M04931_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
PITX1_FL_Methyl-HT-SELEX
0.867 0.965
Ptx1
M02123_2.00
Drosophila melanogaster
NTAATCYNN

NNRGATTAN
PBM
Weirauch et al.(2014)
pTH5644
0.866 0.947
Ptx1
M00562_2.00
Drosophila melanogaster
NYTAATCCBN

NVGGATTARN
PBM
Busser et al.(2012a)
Ptx1
0.866 0.947
Ptx1
M03842_2.00
Drosophila melanogaster
NTAATCCN

NGGATTAN
SELEX
Nitta et al.(2015)
Ptx1_1
0.866 0.947
Ptx1
M03843_2.00
Drosophila melanogaster
NTAATCCN

NGGATTAN
SELEX
Nitta et al.(2015)
Ptx1_2
0.866 0.947
Ptx1
M03844_2.00
Drosophila melanogaster
NCGHTAATCCN

NGGATTADCGN
SELEX
Nitta et al.(2015)
Ptx1_3
0.866 0.947
Ptx1
M06521_2.00
Drosophila melanogaster
YTAATCC

GGATTAR
B1H
Mathelier et al.(2014)
MA0201.1
0.866 0.947
Ptx1
M06319_2.00
Drosophila melanogaster
YTAATCC

GGATTAR
B1H
Zhu et al.(2011)
Ptx1_Cell_FBgn0020912
0.866 0.947
Ptx1
M06320_2.00
Drosophila melanogaster
NYTAATCC

GGATTARN
B1H
Zhu et al.(2011)
Ptx1_SOLEXA_FBgn0020912
0.866 0.947
PITX2
M00311_2.00
Homo sapiens
TTAATCCY

RGGATTAA
PBM
Barrera et al.(2016)
PITX2_R108H
0.862 0.982
CBG01820
M01241_2.00
Caenorhabditis briggsae
NTAATCCN

NGGATTAN
PBM
Lambert et al.(2019)
pTH11454
0.856 0.825
PITX2
M00312_2.00
Homo sapiens
NNNTATWAATTNN

NNAATTWATANNN
PBM
Barrera et al.(2016)
PITX2_R130W
0.833 0.982
Gsc
M02120_2.00
Drosophila melanogaster
NTAATCYN

NRGATTAN
PBM
Weirauch et al.(2014)
pTH5511
0.763 0.614
Gsc
M03817_2.00
Drosophila melanogaster
TAATCCB

VGGATTA
SELEX
Nitta et al.(2015)
Gsc_1
0.763 0.614
Gsc
M03818_2.00
Drosophila melanogaster
TAATCGGATTA

TAATCCGATTA
SELEX
Nitta et al.(2015)
Gsc_2
0.763 0.614
Gsc
M03819_2.00
Drosophila melanogaster
TAATCYNHTAATCBN

NVGATTADNRGATTA
SELEX
Nitta et al.(2015)
Gsc_3
0.763 0.614
Gsc
M03820_2.00
Drosophila melanogaster
TAATCGGATTA

TAATCCGATTA
SELEX
Nitta et al.(2015)
Gsc_4
0.763 0.614
Gsc
M03821_2.00
Drosophila melanogaster
TAATCYNWTWATCYB

VRGATWAWNRGATTA
SELEX
Nitta et al.(2015)
Gsc_5
0.763 0.614
Gsc
M05873_2.00
Drosophila melanogaster
TAATCSNHTWA

TWADNSGATTA
SMiLE-seq
Isakova et al.(2017)
Gsc
0.763 0.614
Gsc
M06509_2.00
Drosophila melanogaster
TAATCY

RGATTA
B1H
Mathelier et al.(2014)
MA0190.1
0.763 0.614
Gsc
M06297_2.00
Drosophila melanogaster
VNTAATCY

RGATTANB
B1H
Zhu et al.(2011)
Gsc_Cell_FBgn0010323
0.763 0.614
Gsc
M06298_2.00
Drosophila melanogaster
NTAATCY

RGATTAN
B1H
Zhu et al.(2011)
Gsc_SOLEXA_FBgn0010323
0.763 0.614
Dmbx1
M00441_2.00
Mus musculus
NTAATCYNN

NNRGATTAN
PBM
Berger et al.(2008)
Dmbx1_2277
0.755 0.667
DMBX1
M03236_2.00
Homo sapiens
NHTAATCCBN

NVGGATTADN
SELEX
Jolma et al.(2013)
DMBX1_1
0.755 0.667
DMBX1
M05383_2.00
Homo sapiens
NTAATCSN

NSGATTAN
SELEX
Yin et al.(2017)
DMBX1_eDBD_HT-SELEX
0.755 0.667
DMBX1
M05384_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
DMBX1_eDBD_Methyl-HT-SELEX
0.755 0.667
ceh-53
M00679_2.00
Caenorhabditis elegans
HTAATCYN

NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10699
0.751 0.544
GSC2
M03080_2.00
Homo sapiens
NHTAATCCBH

DVGGATTADN
SELEX
Jolma et al.(2013)
GSC2_1
0.742 0.632
GSC2
M04920_2.00
Homo sapiens
NTAATNNN

NNNATTAN
SELEX
Yin et al.(2017)
GSC2_eDBD_HT-SELEX
0.742 0.632
GSC2
M04921_2.00
Homo sapiens
NTAATCYN

NRGATTAN
SELEX
Yin et al.(2017)
GSC2_eDBD_Methyl-HT-SELEX
0.742 0.632
Gsc
M00411_2.00
Mus musculus
NNTAATYBN

NVRATTANN
PBM
Berger et al.(2008)
Gsc_2327
0.741 0.579
GSC
M03146_2.00
Homo sapiens
NHTAATCCNH

DNGGATTADN
SELEX
Jolma et al.(2013)
GSC_1
0.741 0.579
GSC
M05134_2.00
Homo sapiens
NTAATCCB

VGGATTAN
SELEX
Yin et al.(2017)
GSC_eDBD_HT-SELEX
0.741 0.579
GSC
M05136_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
GSC_FL_HT-SELEX
0.741 0.579
gsc
M09584_2.00
Xenopus tropicalis
NTAATCYN

NRGATTAN
Misc
Heinz et al.(2010)
FrogEmbryos-GSC_DRA000576
0.741 0.579
GSC
M05135_2.00
Homo sapiens
HTAATCCB

VGGATTAD
SELEX
Yin et al.(2017)
GSC_eDBD_Methyl-HT-SELEX
0.741 0.579
GSC
M05137_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
GSC_FL_Methyl-HT-SELEX
0.741 0.579
Otx1
M00396_2.00
Mus musculus
NTAAKCYN

NRGMTTAN
PBM
Berger et al.(2008)
Otx1_2325
0.731 0.614
Otx2
M00418_2.00
Mus musculus
NTAAKMBN

NVKMTTAN
PBM
Berger et al.(2008)
Otx2_3441
0.731 0.614
OTX1
M03116_2.00
Homo sapiens
NNTAAKCGGATTANN

NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
OTX1_1
0.731 0.614
OTX1
M03117_2.00
Homo sapiens
NTAATCSB

VSGATTAN
SELEX
Jolma et al.(2013)
OTX1_2
0.731 0.614
OTX2
M03197_2.00
Homo sapiens
NHTAAKCGGATTANN

NNTAATCCGMTTADN
SELEX
Jolma et al.(2013)
OTX2_1
0.731 0.614
OTX2
M03198_2.00
Homo sapiens
HTAATCCB

VGGATTAD
SELEX
Jolma et al.(2013)
OTX2_2
0.731 0.614
Otx1
M03249_2.00
Mus musculus
NNTAAKCGGATTANN

NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
Otx1_1
0.731 0.614
Otx1
M03250_2.00
Mus musculus
NTAATCCN

NGGATTAN
SELEX
Jolma et al.(2013)
Otx1_2
0.731 0.614
oc
M03808_2.00
Drosophila melanogaster
HTAATCCB

VGGATTAD
SELEX
Nitta et al.(2015)
oc_1
0.731 0.614
OTX1
M05022_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_HT-SELEX
0.731 0.614
OTX1
M05024_2.00
Homo sapiens
NTAATCCNNN

NNNGGATTAN
SELEX
Yin et al.(2017)
OTX1_FL_HT-SELEX
0.731 0.614
OTX2
M05251_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_HT-SELEX
0.731 0.614
oc
M06502_2.00
Drosophila melanogaster
TAATCC

GGATTA
B1H
Mathelier et al.(2014)
MA0234.1
0.731 0.614
oc
M06282_2.00
Drosophila melanogaster
WTAATCC

GGATTAW
B1H
Zhu et al.(2011)
Oc_Cell_FBgn0004102
0.731 0.614
oc
M06283_2.00
Drosophila melanogaster
NTAATCCB

VGGATTAN
B1H
Zhu et al.(2011)
Oc_SOLEXA_FBgn0004102
0.731 0.614
OTX2
M09153_2.00
Homo sapiens
BYTAATCCYYN

NRRGGATTARV
Misc
Kulakovskiy et al.(2013)
OTX2_HUMAN.H11MO.0.A
0.731 0.614
Otx2
M09183_2.00
Mus musculus
HTAATCCYNYNN

NNRNRGGATTAD
Misc
Kulakovskiy et al.(2013)
OTX2_MOUSE.H11MO.0.A
0.731 0.614
Otx2
M09569_2.00
Mus musculus
NHTAATCCHB

VDGGATTADN
Misc
Heinz et al.(2010)
EpiLC-Otx2_GSE56098
0.731 0.614
oc
M09681_2.00
Drosophila melanogaster
HTAATCCN

NGGATTAD
Misc
Kulakovskiy et al.(2009)
oc
0.731 0.614
OTX1
M10673_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX1_Q5
0.731 0.614
OTX2
M10727_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3_01
0.731 0.614
OTX2
M10728_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3
0.731 0.614
OTX1
M05023_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_Methyl-HT-SELEX
0.731 0.614
OTX1
M05025_2.00
Homo sapiens
HTAATCCNHN

NDNGGATTAD
SELEX
Yin et al.(2017)
OTX1_FL_Methyl-HT-SELEX
0.731 0.614
OTX2
M05252_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_Methyl-HT-SELEX
0.731 0.614
CRX
M00274_2.00
Homo sapiens
NMTAATCCSN

NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_REF
0.726 0.614
Crx
M00489_2.00
Mus musculus
NWAAKMBN

NVKMTTWN
PBM
Berger et al.(2008)
Crx_3485
0.726 0.614
CRX
M04949_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
CRX_FL_HT-SELEX
0.726 0.614
Crx
M08139_2.00
Mus musculus
YTAATCCYCYY

RRGRGGATTAR
ChIP-seq
Mathelier et al.(2014)
MA0467.1
0.726 0.614
CRX
M09132_2.00
Homo sapiens
BYTAATCCBHYYN

NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_HUMAN.H11MO.0.B
0.726 0.614
Crx
M09208_2.00
Mus musculus
BYTAATCCBHYYN

NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_MOUSE.H11MO.0.A
0.726 0.614
Crx
M09577_2.00
Mus musculus
NYTAATCC

GGATTARN
Misc
Heinz et al.(2010)
Retina-Crx_GSE20012
0.726 0.614
CRX
M10647_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_01
0.726 0.614
CRX
M10648_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_02
0.726 0.614
CRX
M00275_2.00
Homo sapiens
NMTAATCCSN

NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_V66I
0.726 0.614
CRX
M04950_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
CRX_FL_Methyl-HT-SELEX
0.726 0.614
ceh-37
M00674_2.00
Caenorhabditis elegans
HTAATCYN

NRGATTAD
PBM
Narasimhan et al.(2015)
pTH10716
0.724 0.509
CRX
M00273_2.00
Homo sapiens
NNYTAATCCVN

NBGGATTARNN
PBM
Barrera et al.(2016)
CRX_R90W
0.716 0.596
NEMVEDRAFT_v1g113057
M02144_2.00
Nematostella vectensis
NYTAATCCBN

NVGGATTARN
PBM
Weirauch et al.(2014)
pTH6135
0.713 0.474
HBX4_ECHGR
M02195_2.00
Echinococcus granulosus
NHTAATCYNN

NNRGATTADN
PBM
Weirauch et al.(2014)
pTH6301
0.709 0.526
CRX
M00270_2.00
Homo sapiens
NWDAKNN

NNMTHWN
PBM
Barrera et al.(2016)
CRX_E80A
0.706 0.596
ceh-36
M00673_2.00
Caenorhabditis elegans
NWAATCYN

NRGATTWN
PBM
Narasimhan et al.(2015)
pTH10730
0.706 0.526
CRX
M00271_2.00
Homo sapiens
NHDAKNN

NNMTHDN
PBM
Barrera et al.(2016)
CRX_R41Q
0.694 0.596
CRX
M00272_2.00
Homo sapiens
NNHNATNN

NNATNDNN
PBM
Barrera et al.(2016)
CRX_R41W
0.694 0.596
DPRX
M03237_2.00
Homo sapiens
NHTAATCYNN

NNRGATTADN
SELEX
Jolma et al.(2013)
DPRX_1
0.656 0.421
DPRX
M03238_2.00
Homo sapiens
NRGMTAATCYN

NRGATTAKCYN
SELEX
Jolma et al.(2013)
DPRX_2
0.656 0.421
DPRX
M05388_2.00
Homo sapiens
VGMTAATCYN

NRGATTAKCB
SELEX
Yin et al.(2017)
DPRX_eDBD_HT-SELEX
0.656 0.421
DPRX
M05389_2.00
Homo sapiens
AGATMATCYN

NRGATKATCT
SELEX
Yin et al.(2017)
DPRX_eDBD_Methyl-HT-SELEX
0.656 0.421
dharma
M02080_2.00
Danio rerio
NNRAKCY

RGMTYNN
PBM
Weirauch et al.(2014)
pTH6530
0.631 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R002462 Homeodomain 61 117

Links

Other Homeodomain family TFs
Other Geospiza fortis TFs

1129 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACOC_0000393801 Angiostrongylus costaricensis ACOC_0000393801 I
AEPI008243 Anopheles epiroticus AEPI008243 I
ANCDUO_01775 Ancylostoma duodenale ANCDUO_01775 I
A_00975 Schistosoma haematobium A_00975 I
Brh_R010078 Buceros rhinoceros Brh_R010078 I
D915_05491 Fasciola hepatica D915_05491 I
ENSACAG00000003721 Anolis carolinensis ENSACAG00000003721 I
CABZ01017151.1 Danio rerio ENSDARG00000104156 I
ENSDORG00000008440 Dipodomys ordii ENSDORG00000008440 N
ENSECAG00000023678 Equus caballus ENSECAG00000023678 I
PBX1 Echinops telfairi ENSETEG00000019309 I
PBX1 Homo sapiens ENSG00000185630 D
ENSGMOG00000006428 Gadus morhua ENSGMOG00000006428 I
ENSLACG00000016442 Latimeria chalumnae ENSLACG00000016442 I
ENSLOCG00000006841 Lepisosteus oculatus ENSLOCG00000006841 I
ENSMEUG00000002971 Macropus eugenii ENSMEUG00000002971 I
ENSMEUG00000006330 Macropus eugenii ENSMEUG00000006330 I
Pbx1 Mus musculus ENSMUSG00000052534 D
PBX4 Oryctolagus cuniculus ENSOCUG00000029208 I
PBX1 Oryzias latipes ENSORLG00000016702 I
ENSSTOG00000013679 Ictidomys tridecemlineatus ENSSTOG00000013679 I
PBX3 Tupaia belangeri ENSTBEG00000016855 I
EVEC_0000238601 Enterobius vermicularis EVEC_0000238601 I
L898_g16919 Steinernema monticolum L898_g16919 N
MDOA002143 Musca domestica MDOA002143 I
MESCA000707 Megaselia scalaris MESCA000707 I
MhA1_Contig138.frz3.gene24 Meloidogyne hapla MhA1_Contig138.frz3.gene24 I
Myotis_brandtii_MIMI_L668_10004071 Myotis brandtii Myotis_brandtii_MIMI_L668_10004071 I
Myotis_brandtii_MIMI_R196_10004074 Myotis brandtii Myotis_brandtii_MIMI_R196_10004074 I
Ogr15448 Ophisaurus gracilis Ogr15448 I
ORUFI07G17770 Oryza rufipogon ORUFI07G17770 N
PPAI000859 Phlebotomus papatasi PPAI000859 I
PXEA_0001880101 Protopolystoma xenopodis PXEA_0001880101 I
SVUK_0000462001 Strongylus vulgaris SVUK_0000462001 I
SVUK_0001050601 Strongylus vulgaris SVUK_0001050601 I
TCNE_0000805901 Toxocara canis TCNE_0000805901 I
TELCIR_02026 Teladorsagia circumcincta TELCIR_02026 I