Ogr08724 (Ophisaurus gracilis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ogr08724 T226517_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr08724 Homeodomain 86 142

Links

Other Homeodomain family TFs
Other Ophisaurus gracilis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009617 Calypte anna Aan_R009617 I 0.000
Aan_R009930 Calypte anna Aan_R009930 I 0.000
Afo_R005569 Aptenodytes forsteri Afo_R005569 I 0.000
Afo_R014105 Aptenodytes forsteri Afo_R014105 I 0.000
Alligator_sinensis_CCG019450.1 Alligator sinensis Alligator_sinensis_CCG019450.1 I 0.000
Alligator_sinensis_CCG019475.1 Alligator sinensis Alligator_sinensis_CCG019475.1 I 0.000
Brh_R007241 Buceros rhinoceros Brh_R007241 I 0.000
Cmyd_10004276 Chelonia mydas Cmyd_10004276 I 0.000
HSF2 Anolis carolinensis ENSACAG00000001260 I 0.000
ENSAMEG00000007373 Ailuropoda melanoleuca ENSAMEG00000007373 I 0.000
ENSAMXG00000017965 Astyanax mexicanus ENSAMXG00000017965 I 0.000
ENSAPLG00000005126 Anas platyrhynchos ENSAPLG00000005126 I 0.000
HSF2 Bos taurus ENSBTAG00000012946 I 0.000
HSF2 Canis familiaris ENSCAFG00000000969 I 0.000
ENSCHOG00000010951 Choloepus hoffmanni ENSCHOG00000010951 I 0.000
HSF2 Callithrix jacchus ENSCJAG00000003956 I 0.000
HSF2 Cavia porcellus ENSCPOG00000007509 I 0.000
ENSCSAG00000005351 Chlorocebus sabaeus ENSCSAG00000005351 I 0.000
ENSCSAG00000016240 Chlorocebus sabaeus ENSCSAG00000016240 I 0.000
hsf2 Danio rerio ENSDARG00000053097 D 0.000
HSF2 Dasypus novemcinctus ENSDNOG00000031260 I 0.000
Hsf2 Dipodomys ordii ENSDORG00000012571 I 0.000
HSF2 Equus caballus ENSECAG00000012553 I 0.000
HSF2 Erinaceus europaeus ENSEEUG00000000435 I 0.000
HSF2 Echinops telfairi ENSETEG00000006154 I 0.000
ENSFALG00000004260 Ficedula albicollis ENSFALG00000004260 I 0.000
ENSFALG00000011294 Ficedula albicollis ENSFALG00000011294 I 0.000
ENSFCAG00000025714 Felis catus ENSFCAG00000025714 I 0.000
ENSFCAG00000027283 Felis catus ENSFCAG00000027283 I 0.000
HSF2 Homo sapiens ENSG00000025156 D 0.000
hsf2 Gasterosteus aculeatus ENSGACG00000004065 I 0.000
ENSGALG00000014870 Gallus gallus ENSGALG00000014870 I 0.000
HSF2 Gorilla gorilla ENSGGOG00000023192 I 0.000
ENSGGOG00000024705 Gorilla gorilla ENSGGOG00000024705 I 0.000
ENSGMOG00000014148 Gadus morhua ENSGMOG00000014148 I 0.000
ENSLACG00000002436 Latimeria chalumnae ENSLACG00000002436 I 0.000
HSF2 Loxodonta africana ENSLAFG00000006440 I 0.000
ENSLOCG00000014654 Lepisosteus oculatus ENSLOCG00000014654 I 0.000
ENSLOCG00000017255 Lepisosteus oculatus ENSLOCG00000017255 I 0.000
ENSMGAG00000000814 Meleagris gallopavo ENSMGAG00000000814 I 0.000
HSF2 Meleagris gallopavo ENSMGAG00000013320 I 0.000
ENSMICG00000006415 Microcebus murinus ENSMICG00000006415 I 0.000
HSF2 Myotis lucifugus ENSMLUG00000002355 I 0.000
HSF2 Macaca mulatta ENSMMUG00000007910 I 0.000
HSF2 Monodelphis domestica ENSMODG00000017753 I 0.000
ENSMODG00000027338 Monodelphis domestica ENSMODG00000027338 I 0.000
ENSMPUG00000014453 Mustela putorius furo ENSMPUG00000014453 I 0.000
Hsf2 Mus musculus ENSMUSG00000019878 D 0.000
ENSNLEG00000013721 Nomascus leucogenys ENSNLEG00000013721 I 0.000
HSF2 Ornithorhynchus anatinus ENSOANG00000014662 I 0.000
ENSOARG00000008274 Ovis aries ENSOARG00000008274 I 0.000
HSF2 Oryctolagus cuniculus ENSOCUG00000025991 I 0.000
HSF2 Otolemur garnettii ENSOGAG00000015721 I 0.000
ENSONIG00000001677 Oreochromis niloticus ENSONIG00000001677 I 0.000
hsf2 Oryzias latipes ENSORLG00000015498 I 0.000
ENSP00000357440-D1 Bos grunniens ENSP00000357440-D1 I 0.000
ENSPANG00000022516 Papio anubis ENSPANG00000022516 I 0.000
HSF2 Procavia capensis ENSPCAG00000016109 I 0.000
ENSPPYG00000016976 Pongo abelii ENSPPYG00000016976 I 0.000
ENSPSIG00000014566 Pelodiscus sinensis ENSPSIG00000014566 I 0.000
HSF2 Pan troglodytes ENSPTRG00000018561 I 0.000
Hsf2 Rattus norvegicus ENSRNOG00000000808 I 0.000
ENSSHAG00000005636 Sarcophilus harrisii ENSSHAG00000005636 I 0.000
ENSSHAG00000013467 Sarcophilus harrisii ENSSHAG00000013467 I 0.000
HSF2 Sus scrofa ENSSSCG00000004238 I 0.000
ENSSTOG00000007461 Ictidomys tridecemlineatus ENSSTOG00000007461 I 0.000
ENSTBEG00000007814 Tupaia belangeri ENSTBEG00000007814 I 0.000
ENSTBEG00000012453 Tupaia belangeri ENSTBEG00000012453 I 0.000
ENSTBEG00000013569 Tupaia belangeri ENSTBEG00000013569 I 0.000
ENSTGUG00000002805 Taeniopygia guttata ENSTGUG00000002805 I 0.000
HSF2 Taeniopygia guttata ENSTGUG00000011838 I 0.000
ENSTSYG00000005378 Tarsius syrichta ENSTSYG00000005378 I 0.000
HSF2 Tursiops truncatus ENSTTRG00000000247 I 0.000
HSF2 Vicugna pacos ENSVPAG00000009387 I 0.000
e_gw1.8.1452.1 Mycosphaerella graminicola e_gw1.8.1452.1 I 0.000
Gfo_R015522 Geospiza fortis Gfo_R015522 I 0.000
Gfo_R016174 Geospiza fortis Gfo_R016174 I 0.000
Mycgr3G45761 Zymoseptoria tritici Mycgr3G45761 I 0.000
Myotis_brandtii_HSF2_10035618 Myotis brandtii Myotis_brandtii_HSF2_10035618 I 0.000
Ogr00694 Ophisaurus gracilis Ogr00694 I 0.000
Pvit_08961 Pogona vitticeps Pvit_08961 I 0.000
Tal_R003171 Tyto alba Tal_R003171 I 0.000
Tal_R013611 Tyto alba Tal_R013611 I 0.000
W97_05233 Coniosporium apollinis W97_05233 I 0.000
hsf2.L Xenopus laevis XB-GENE-954983 I 0.000
XP_002937261 Xenopus tropicalis XP_002937261 I 0.000
XP_002937262 Xenopus tropicalis XP_002937262 I 0.000
XP_002937263 Xenopus tropicalis XP_002937263 I 0.000