Pm023161 (Prunus mume)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pm023161 T226674_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.857 0.842
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.850 0.789
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.850 0.789
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.841 0.789
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.841 0.789
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.839 0.772
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.839 0.772
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.812 0.754
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.812 0.754
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.797 0.772
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.797 0.772
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.797 0.772
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.791 0.649
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.754 0.667
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.754 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm023161 Homeodomain 93 149

Links

Other Homeodomain family TFs
Other Prunus mume TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALUE_0002179401 Ascaris lumbricoides ALUE_0002179401 I
ANCCAN_14103 Ancylostoma caninum ANCCAN_14103 I
ANCCAN_17081 Ancylostoma caninum ANCCAN_17081 I
ASU_12501 Ascaris suum ASU_12501 I
CBG16594 Caenorhabditis briggsae CBG16594 I
CBG19604 Caenorhabditis briggsae CBG19604 I
CBG23318 Caenorhabditis briggsae CBG23318 I
CBG23319 Caenorhabditis briggsae CBG23319 I
CBN03435 Caenorhabditis brenneri CBN03435 N
CBN07936 Caenorhabditis brenneri CBN07936 I
CBN19580 Caenorhabditis brenneri CBN19580 N
CBN20518 Caenorhabditis brenneri CBN20518 I
CBN20828 Caenorhabditis brenneri CBN20828 I
CBN30215 Caenorhabditis brenneri CBN30215 I
CJA04720 Caenorhabditis japonica CJA04720 I
CRE06667 Caenorhabditis remanei CRE06667 I
CRE09267 Caenorhabditis remanei CRE09267 I
CRE25378 Caenorhabditis remanei CRE25378 I
CRE26981 Caenorhabditis remanei CRE26981 I
CRE26982 Caenorhabditis remanei CRE26982 I
HCOI00601000 Haemonchus contortus HCOI00601000 I
HCOI01268300 Haemonchus contortus HCOI01268300 I
HPLM_0000564201 Haemonchus placei HPLM_0000564201 I
L596_g23777 Steinernema carpocapsae L596_g23777 I
L893_g25227 Steinernema glaseri L893_g25227 I
L893_g6878 Steinernema glaseri L893_g6878 I
NBR_0000170601 Nippostrongylus brasiliensis NBR_0000170601 I
NECAME_00872 Necator americanus NECAME_00872 I
PPA21285 Pristionchus pacificus PPA21285 I
PTRK_0001312000 Parastrongyloides trichosuri PTRK_0001312000 I
RSKR_0000625800 Rhabditophanes kr3021 RSKR_0000625800 I
RSKR_0000868400 Rhabditophanes kr3021 RSKR_0000868400 N
scaffold51-EXSNAP2012.23 Pristionchus exspectatus scaffold51-EXSNAP2012.23 I
SPAL_0000490500 Strongyloides papillosus SPAL_0000490500 I
SSTP_0000546600 Strongyloides stercoralis SSTP_0000546600 I
SVE_1951500 Strongyloides venezuelensis SVE_1951500 I
nhr-10 Caenorhabditis elegans WBGene00003609 I
nhr-68 Caenorhabditis elegans WBGene00003658 I
nhr-88 Caenorhabditis elegans WBGene00003678 I
nhr-101 Caenorhabditis elegans WBGene00003691 I
nhr-114 Caenorhabditis elegans WBGene00003704 N