28307.m000017 (Ricinus communis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 28307.m000017 T226960_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.472 1.000
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.472 1.000
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.472 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
28307.m000017 Homeodomain 1 33

Links

Other Homeodomain family TFs
Other Ricinus communis TFs

543 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29950.m001171 Ricinus communis 29950.m001171 I
ANAC087 Arabidopsis thaliana AT5G18270 D
Bo9g175670 Brassica oleracea Bo9g175670 I
Bostr.26527s0381 Boechera stricta Bostr.26527s0381 I
Cagra.0906s0022 Capsella grandiflora Cagra.0906s0022 I
Carubv10001373m.g Capsella rubella Carubv10001373m.g I
cassava25877.m1 Manihot esculenta cassava25877.m1 I
Ca_08255 Cicer arietinum Ca_08255 I
chr1.CM0104.260.nc Lotus japonicus chr1.CM0104.260.nc I
Eucgr.A02074 Eucalyptus grandis Eucgr.A02074 I
evm.TU.supercontig_594.1 Carica papaya evm.TU.supercontig_594.1 I
F775_13622 Aegilops tauschii F775_13622 N
F775_16032 Aegilops tauschii F775_16032 I
F775_29497 Aegilops tauschii F775_29497 I
F775_32919 Aegilops tauschii F775_32919 N
ANAC087 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001462 I
GLYMA16G04720 Glycine max GLYMA16G04720 I
GLYMA19G28515 Glycine max GLYMA19G28515 I
Gorai.007G267700 Gossypium raimondii Gorai.007G267700 I
GRMZM2G154182 Zea mays GRMZM2G154182 N
MLOC_5374 Hordeum vulgare MLOC_5374 N
MLOC_58272 Hordeum vulgare MLOC_58272 N
MLOC_72737 Hordeum vulgare MLOC_72737 I
MTR_6g032770 Medicago truncatula MTR_6g032770 I
MTR_7g085260 Medicago truncatula MTR_7g085260 I
Pavir.Ba02955 Panicum virgatum Pavir.Ba02955 I
Pavir.Bb02033 Panicum virgatum Pavir.Bb02033 I
Pavir.Eb00839 Panicum virgatum Pavir.Eb00839 I
SapurV1A.0308s0280 Salix purpurea SapurV1A.0308s0280 I
SapurV1A.2283s0010 Salix purpurea SapurV1A.2283s0010 I
Sb03g008860 Sorghum bicolor Sb03g008860 N
TCM_026028 Theobroma cacao TCM_026028 I
TRAES3BF020100120CFD_g Triticum aestivum TRAES3BF020100120CFD_g I
TRAES3BF020100130CFD_g Triticum aestivum TRAES3BF020100130CFD_g N
Traes_3AS_4220612F3 Triticum aestivum Traes_3AS_4220612F3 I
Traes_3DS_3520D86D7 Triticum aestivum Traes_3DS_3520D86D7 N
Traes_5AL_373E730BB Triticum aestivum Traes_5AL_373E730BB I
Traes_5BL_59AFA4B01 Triticum aestivum Traes_5BL_59AFA4B01 I
Traes_7AS_7A7A0CF5B Triticum aestivum Traes_7AS_7A7A0CF5B I
Traes_7AS_CB673ED0C Triticum aestivum Traes_7AS_CB673ED0C N
Traes_7BS_BA1111780 Triticum aestivum Traes_7BS_BA1111780 N
Traes_7BS_CF3224FD0 Triticum aestivum Traes_7BS_CF3224FD0 N
Traes_7DS_2452C1E32 Triticum aestivum Traes_7DS_2452C1E32 I
Traes_7DS_6418D89A3 Triticum aestivum Traes_7DS_6418D89A3 N
TRIUR3_23644 Triticum urartu TRIUR3_23644 I