estExt_gwp.C_30002 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 estExt_gwp.C_30002 T227434_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.850 0.965
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.850 0.965
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.850 0.965
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.850 0.947
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.850 0.930
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.850 0.930
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.850 0.930
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.850 0.930
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.850 0.930
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.850 0.930
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.850 0.930
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.850 0.930
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.850 0.930
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.850 0.930
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.850 0.930
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.850 0.930
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.850 0.930
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.850 0.930
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.849 0.930
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.806 0.947
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.806 0.947
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.806 0.947
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.806 0.947
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.806 0.947
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.799 0.912
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.799 0.912
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.561
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.661 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp.C_30002 Homeodomain 158 217

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

434 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007097 Calypte anna Aan_R007097 I
AATE021131 Anopheles atroparvus AATE021131 I
ACYPI060841 Acyrthosiphon pisum ACYPI060841 I
ACYPI50903 Acyrthosiphon pisum ACYPI50903 I
Afo_R003215 Aptenodytes forsteri Afo_R003215 I
AGAP011436 Anopheles gambiae AGAP011436 N
AGAP011437 Anopheles gambiae AGAP011437 I
Alligator_sinensis_CCG017610.1 Alligator sinensis Alligator_sinensis_CCG017610.1 I
AMEC010301 Anopheles melas AMEC010301 I
AMEM016790 Anopheles merus AMEM016790 I
ASTEI06455 Anopheles stephensi ASTEI06455 I
Bm6296 Brugia malayi Bm6296 I
CapteG93575 Capitella teleta CapteG93575 I
CBN13270 Caenorhabditis brenneri CBN13270 I
CGI_10023990 Crassostrea gigas CGI_10023990 I
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I
D917_06660 Trichinella nativa D917_06660 I
D918_06798 Trichuris suis D918_06798 I
DAPPUDRAFT_22285 Daphnia pulex DAPPUDRAFT_22285 I
EFV50386 Trichinella spiralis EFV50386 I
ENSACAG00000003052 Anolis carolinensis ENSACAG00000003052 I
ENSACAG00000005898 Anolis carolinensis ENSACAG00000005898 I
EBF3 Anolis carolinensis ENSACAG00000008590 I
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I
ENSAMXG00000006585 Astyanax mexicanus ENSAMXG00000006585 I
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I
EBF1 Bos taurus ENSBTAG00000037508 I
EBF4 Bos taurus ENSBTAG00000037757 I
EBF2 Bos taurus ENSBTAG00000040390 I
EBF4 Canis familiaris ENSCAFG00000006631 I
EBF2 Canis familiaris ENSCAFG00000008918 I
EBF1 Canis familiaris ENSCAFG00000017318 I
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I
EBF1 Callithrix jacchus ENSCJAG00000019016 I
EBF2 Callithrix jacchus ENSCJAG00000019921 I
EBF2 Cavia porcellus ENSCPOG00000001463 I
EBF3 Cavia porcellus ENSCPOG00000005096 I
EBF1 Cavia porcellus ENSCPOG00000026184 I
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I
ebf1b Danio rerio ENSDARG00000069196 I
ebf3b Danio rerio ENSDARG00000091287 I
si:ch211-51e8.2 Danio rerio ENSDARG00000092635 I
ebf1a Danio rerio ENSDARG00000099849 I
ebf3a Danio rerio ENSDARG00000100244 I
ENSDNOG00000036735 Dasypus novemcinctus ENSDNOG00000036735 I
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I
EBF4 Dasypus novemcinctus ENSDNOG00000049548 I
EBF1 Equus caballus ENSECAG00000007964 I
EBF1 Echinops telfairi ENSETEG00000011711 I
EBF3 Echinops telfairi ENSETEG00000014060 I
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I
EBF1 Felis catus ENSFCAG00000008547 I
EBF4 Homo sapiens ENSG00000088881 D
EBF3 Homo sapiens ENSG00000108001 D
EBF1 Homo sapiens ENSG00000164330 D
EBF2 Homo sapiens ENSG00000221818 D
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I
ENSGACG00000010053 Gasterosteus aculeatus ENSGACG00000010053 I
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I
EBF2 Gallus gallus ENSGALG00000000242 I
EBF1 Gorilla gorilla ENSGGOG00000000033 I
EBF2 Gorilla gorilla ENSGGOG00000001585 I
EBF4 Gorilla gorilla ENSGGOG00000015503 I
ENSGMOG00000015541 Gadus morhua ENSGMOG00000015541 I
ENSGMOG00000016636 Gadus morhua ENSGMOG00000016636 I
ENSLACG00000001966 Latimeria chalumnae ENSLACG00000001966 I
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I
ENSLACG00000017503 Latimeria chalumnae ENSLACG00000017503 I
EBF1 Loxodonta africana ENSLAFG00000017522 I
EBF2 Loxodonta africana ENSLAFG00000022465 I
ENSLOCG00000007615 Lepisosteus oculatus ENSLOCG00000007615 I
ENSLOCG00000009282 Lepisosteus oculatus ENSLOCG00000009282 I
ENSLOCG00000015225 Lepisosteus oculatus ENSLOCG00000015225 I
EBF2 Meleagris gallopavo ENSMGAG00000000791 I
EBF1 Microcebus murinus ENSMICG00000010036 I
EBF2 Myotis lucifugus ENSMLUG00000011509 I
EBF4 Myotis lucifugus ENSMLUG00000023832 I
ENSMLUG00000025817 Myotis lucifugus ENSMLUG00000025817 I
EBF3 Macaca mulatta ENSMMUG00000011447 I
EBF4 Monodelphis domestica ENSMODG00000005256 I
EBF1 Monodelphis domestica ENSMODG00000008198 I
ENSMODG00000016695 Monodelphis domestica ENSMODG00000016695 I
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I
ENSMPUG00000009093 Mustela putorius furo ENSMPUG00000009093 I
ENSMPUG00000013409 Mustela putorius furo ENSMPUG00000013409 I
Ebf3 Mus musculus ENSMUSG00000010476 I
Ebf2 Mus musculus ENSMUSG00000022053 D
Ebf4 Mus musculus ENSMUSG00000053552 D
Ebf1 Mus musculus ENSMUSG00000057098 D
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I
EBF3 Ornithorhynchus anatinus ENSOANG00000012326 I
EBF1 Ornithorhynchus anatinus ENSOANG00000012338 I
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I
ENSOARG00000012916 Ovis aries ENSOARG00000012916 I
EBF1 Oryctolagus cuniculus ENSOCUG00000008985 I
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I
EBF4 Otolemur garnettii ENSOGAG00000004688 I
EBF3 Otolemur garnettii ENSOGAG00000007572 I
EBF2 Otolemur garnettii ENSOGAG00000010783 I
ENSONIG00000000451 Oreochromis niloticus ENSONIG00000000451 I
ENSONIG00000004376 Oreochromis niloticus ENSONIG00000004376 I
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I
ENSONIG00000017655 Oreochromis niloticus ENSONIG00000017655 I
ENSONIG00000019141 Oreochromis niloticus ENSONIG00000019141 I
EBF1 Oryzias latipes ENSORLG00000002342 I
ebf3a Oryzias latipes ENSORLG00000005870 I
ebf2 Oryzias latipes ENSORLG00000006408 I
EBF1 Oryzias latipes ENSORLG00000007471 I
EBF4 Oryzias latipes ENSORLG00000020414 I
ENSP00000405003 Macaca fascicularis ENSP00000405003 I
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I
ENSPFOG00000000294 Poecilia formosa ENSPFOG00000000294 I
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I
ENSPFOG00000009617 Poecilia formosa ENSPFOG00000009617 I
ENSPFOG00000017183 Poecilia formosa ENSPFOG00000017183 I
ENSPFOG00000023105 Poecilia formosa ENSPFOG00000023105 I
ENSPMAG00000003301 Petromyzon marinus ENSPMAG00000003301 I
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I
ENSPPYG00000010836 Pongo abelii ENSPPYG00000010836 I
ENSPPYG00000015995 Pongo abelii ENSPPYG00000015995 I
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I
EBF2 Pan troglodytes ENSPTRG00000003058 I
EBF1 Pan troglodytes ENSPTRG00000017477 I
ENSPTRG00000039291 Pan troglodytes ENSPTRG00000039291 I
EBF2 Pteropus vampyrus ENSPVAG00000024254 I
Ebf2 Rattus norvegicus ENSRNOG00000011548 I
Ebf3 Rattus norvegicus ENSRNOG00000016102 I
Ebf1 Rattus norvegicus ENSRNOG00000028845 I
ENSSHAG00000011963 Sarcophilus harrisii ENSSHAG00000011963 I
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I
EBF2 Sus scrofa ENSSSCG00000009655 I
ENSSSCG00000010757 Sus scrofa ENSSSCG00000010757 I
ENSSSCG00000025433 Sus scrofa ENSSSCG00000025433 I
ENSSTOG00000006113 Ictidomys tridecemlineatus ENSSTOG00000006113 I
ENSSTOG00000026314 Ictidomys tridecemlineatus ENSSTOG00000026314 I
EBF1 Taeniopygia guttata ENSTGUG00000000593 I
EBF2 Taeniopygia guttata ENSTGUG00000004267 I
EBF3 Taeniopygia guttata ENSTGUG00000011600 I
ebf2 Tetraodon nigroviridis ENSTNIG00000015845 I
ENSTNIG00000017063 Tetraodon nigroviridis ENSTNIG00000017063 I
EBF1 Takifugu rubripes ENSTRUG00000009320 I
ebf2 Takifugu rubripes ENSTRUG00000011528 I
EBF4 Tursiops truncatus ENSTTRG00000003459 I
EBF3 Tursiops truncatus ENSTTRG00000014010 I
ENSXMAG00000000489 Xiphophorus maculatus ENSXMAG00000000489 I
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I
ENSXMAG00000010668 Xiphophorus maculatus ENSXMAG00000010668 I
ENSXMAG00000012715 Xiphophorus maculatus ENSXMAG00000012715 I
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I
kn Drosophila melanogaster FBgn0001319 D
GF11778 Drosophila ananassae FBgn0088818 I
GG22397 Drosophila erecta FBgn0114569 I
GH20479 Drosophila grimshawi FBgn0127942 I
GH25280 Drosophila grimshawi FBgn0132735 I
GI21022 Drosophila mojavensis FBgn0143754 I
GL10656 Drosophila persimilis FBgn0148266 I
GM20182 Drosophila sechellia FBgn0175065 I
GJ21945 Drosophila virilis FBgn0209060 I
GK23295 Drosophila willistoni FBgn0225257 I
GE12286 Drosophila yakuba FBgn0230042 I
GA24435 Drosophila pseudoobscura FBgn0245832 I
fgenesh2_pm.scaffold_381000001 Branchiostoma floridae fgenesh2_pm.scaffold_381000001 I
GB42304 Apis mellifera GB42304 I
HelroG112029 Helobdella robusta HelroG112029 I
Hsal_03265--XP_394171.3_APIME Harpegnathos saltator Hsal_03265--XP_394171.3_APIME I
ISCW021819 Ixodes scapularis ISCW021819 I
KGM_09934 Danaus plexippus KGM_09934 I
L596_g20342 Steinernema carpocapsae L596_g20342 I
L798_15574 Zootermopsis nevadensis L798_15574 I
LCUP013861 Lucilia cuprina LCUP013861 I
LOAG_18199 Loa loa LOAG_18199 I
LotgiG225788 Lottia gigantea LotgiG225788 I
MCINX016127 Melitaea cinxia MCINX016127 I
MDOA011385 Musca domestica MDOA011385 I
Myotis_brandtii_Ebf2_10005809 Myotis brandtii Myotis_brandtii_Ebf2_10005809 I
Myotis_brandtii_Ebf3_10024822 Myotis brandtii Myotis_brandtii_Ebf3_10024822 I
Myotis_brandtii_EBF4_10032372 Myotis brandtii Myotis_brandtii_EBF4_10032372 I
nDi.2.2.2.g04990 Dirofilaria immitis nDi.2.2.2.g04990 I
nLs.2.1.2.g08363 Litomosoides sigmodontis nLs.2.1.2.g08363 I
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I
NV10306 Nasonia vitripennis NV10306 I
Ocbimv22038947m.g Octopus bimaculoides Ocbimv22038947m.g N
OFLC_0001346101 Onchocerca flexuosa OFLC_0001346101 N
Ogr09591 Ophisaurus gracilis Ogr09591 I
Ogr13832 Ophisaurus gracilis Ogr13832 I
PHUM119360 Pediculus humanus PHUM119360 I
Pvit_04283 Pogona vitticeps Pvit_04283 I
Pvit_16838 Pogona vitticeps Pvit_16838 I
Sakowv30011013m.g Saccoglossus kowalevskii Sakowv30011013m.g I
SMAR000842 Strigamia maritima SMAR000842 I
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I
TC001270 Tribolium castaneum TC001270 I
TTRE_0000372001 Trichuris trichiura TTRE_0000372001 I
ebf4 Xenopus tropicalis XB-GENE-6030626 I
ebf2.L Xenopus laevis XB-GENE-6252857 I
ebf3 Xenopus tropicalis XB-GENE-962543 I
ebf2 Xenopus tropicalis XB-GENE-971136 I
ebf2.S Xenopus laevis XB-GENE-971141 I