MDP0000123097 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000123097 T228964_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.857 0.842
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.850 0.789
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.850 0.789
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.841 0.789
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.841 0.789
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.839 0.772
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.839 0.772
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.812 0.737
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.812 0.737
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.797 0.772
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.797 0.772
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.797 0.772
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.791 0.649
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.754 0.649
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.754 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000123097 Homeodomain 101 157

Links

Other Homeodomain family TFs
Other Malus domestica TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29661.m000923 Ricinus communis 29661.m000923 N 0.000
cassava32963.m1 Manihot esculenta cassava32963.m1 N 0.000
cassava7505.valid.m1 Manihot esculenta cassava7505.valid.m1 N 0.000
Ca_02226 Cicer arietinum Ca_02226 N 0.000
Ca_09352 Cicer arietinum Ca_09352 N 0.000
chr2.CM0168.260.nc Lotus japonicus chr2.CM0168.260.nc N 0.000
Ciclev10025470m.g Citrus clementina Ciclev10025470m.g N 0.000
Cla014238 Citrullus lanatus Cla014238 N 0.000
Cucsa.103160 Cucumis sativus Cucsa.103160 N 0.000
Eucgr.I00704 Eucalyptus grandis Eucgr.I00704 N 0.000
evm.TU.supercontig_6.17 Carica papaya evm.TU.supercontig_6.17 N 0.000
gene05757-v1.0-hybrid Fragaria vesca gene05757-v1.0-hybrid N 0.000
GLYMA01G40180 Glycine max GLYMA01G40180 N 0.000
GLYMA05G22460 Glycine max GLYMA05G22460 N 0.000
GLYMA11G05110 Glycine max GLYMA11G05110 N 0.000
GLYMA17G17400 Glycine max GLYMA17G17400 N 0.000
Gorai.003G030400 Gossypium raimondii Gorai.003G030400 N 0.000
Gorai.008G083500 Gossypium raimondii Gorai.008G083500 N 0.000
MDP0000165587 Malus domestica MDP0000165587 N 0.000
MDP0000171602 Malus domestica MDP0000171602 N 0.000
MDP0000687763 Malus domestica MDP0000687763 N 0.000
MDP0000822651 Malus domestica MDP0000822651 N 0.000
MDP0000840369 Malus domestica MDP0000840369 N 0.000
MTR_5g015490 Medicago truncatula MTR_5g015490 N 0.000
PGSC0003DMG400021444 Solanum tuberosum PGSC0003DMG400021444 N 0.000
Pm002381 Prunus mume Pm002381 N 0.000
SHR Populus trichocarpa POPTR_0012s06430 N 0.000
PRUPE_ppa004454mg Prunus persica PRUPE_ppa004454mg N 0.000
SapurV1A.0461s0030 Salix purpurea SapurV1A.0461s0030 N 0.000
Solyc02g092370.1 Solanum lycopersicum Solyc02g092370.1 N 0.000
TCM_000801 Theobroma cacao TCM_000801 N 0.000
SHR Vitis vinifera VIT_07s0129g00030 N 0.000