MDP0000322550 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000322550 T229075_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.834 0.842
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.834 0.842
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.834 0.842
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.809 0.772
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.809 0.772
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.800 0.754
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.784 0.737
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.784 0.737
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.778 0.789
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.778 0.789
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.778 0.789
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.778 0.789
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.772 0.772
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.772 0.772
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.769 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000322550 Homeodomain 55 111

Links

Other Homeodomain family TFs
Other Malus domestica TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA002940 Oryza indica BGIOSGA002940 N 0.000
BGIOSGA002943 Oryza indica BGIOSGA002943 N 0.000
BGIOSGA003814 Oryza indica BGIOSGA003814 N 0.000
BRADI2G41670 Brachypodium distachyon BRADI2G41670 N 0.000
GRMZM2G333582 Zea mays GRMZM2G333582 N 0.000
GRMZM2G397755 Zea mays GRMZM2G397755 N 0.000
GRMZM2G463133 Zea mays GRMZM2G463133 N 0.000
LPERR01G05820 Leersia perrieri LPERR01G05820 N 0.000
LPERR01G17450 Leersia perrieri LPERR01G17450 N 0.000
MLOC_70258 Hordeum vulgare MLOC_70258 N 0.000
OB01G16120 Oryza brachyantha OB01G16120 N 0.000
OB01G30040 Oryza brachyantha OB01G30040 N 0.000
OBART01G06120 Oryza barthii OBART01G06120 N 0.000
OBART01G06170 Oryza barthii OBART01G06170 N 0.000
OBART01G20310 Oryza barthii OBART01G20310 N 0.000
OGLUM01G06690 Oryza glumaepatula OGLUM01G06690 N 0.000
OGLUM01G06730 Oryza glumaepatula OGLUM01G06730 N 0.000
OGLUM01G23890 Oryza glumaepatula OGLUM01G23890 N 0.000
OLONG_006433 Oryza longistaminata OLONG_006433 N 0.000
OMERI01G06310 Oryza meridionalis OMERI01G06310 N 0.000
OMERI01G18730 Oryza meridionalis OMERI01G18730 N 0.000
ONIVA01G07080 Oryza nivara ONIVA01G07080 N 0.000
ONIVA01G07190 Oryza nivara ONIVA01G07190 N 0.000
ONIVA01G22870 Oryza nivara ONIVA01G22870 N 0.000
OPUNC01G20610 Oryza punctata OPUNC01G20610 N 0.000
ORGLA01G0058200 Oryza glaberrima ORGLA01G0058200 N 0.000
ORGLA01G0397100 Oryza glaberrima ORGLA01G0397100 N 0.000
ORGLA08G0199700 Oryza glaberrima ORGLA08G0199700 N 0.000
ORUFI01G06710 Oryza rufipogon ORUFI01G06710 N 0.000
ORUFI01G22920 Oryza rufipogon ORUFI01G22920 N 0.000
OS01G0195801 Oryza sativa OS01G0195801 N 0.000
OS01G0196300 Oryza sativa OS01G0196300 N 0.000
OS01G0575200 Oryza sativa OS01G0575200 N 0.000
Pavir.Ea00369 Panicum virgatum Pavir.Ea00369 N 0.000
Pavir.Ea01566 Panicum virgatum Pavir.Ea01566 N 0.000
Pavir.Eb01823 Panicum virgatum Pavir.Eb01823 N 0.000
Sb03g002910 Sorghum bicolor Sb03g002910 N 0.000
Sb03g025860 Sorghum bicolor Sb03g025860 N 0.000
Si001328m.g Setaria italica Si001328m.g N 0.000
Si001494m.g Setaria italica Si001494m.g N 0.000
TRAES3BF047700010CFD_g Triticum aestivum TRAES3BF047700010CFD_g N 0.000