SMU15037608 (Schmidtea mediterranea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SMU15037608 T230308_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.802 0.912
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.790 0.895
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.789 0.895
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.789 0.895
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.789 0.895
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.781 0.860
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.781 0.860
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.781 0.860
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.781 0.860
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.781 0.860
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.781 0.860
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.780 0.842
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.780 0.842
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.780 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMU15037608 Homeodomain 155 214

Links

Other Homeodomain family TFs
Other Schmidtea mediterranea TFs

380 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1YGC6_PANPA Pan paniscus A1YGC6_PANPA D 0.000
Aan_R007044 Calypte anna Aan_R007044 I 0.000
Alligator_sinensis_CCG021621.1 Alligator sinensis Alligator_sinensis_CCG021621.1 I 0.000
Cmyd_10021619 Chelonia mydas Cmyd_10021619 I 0.000
NR2E1 Anolis carolinensis ENSACAG00000005957 I 0.000
ENSAMEG00000008117 Ailuropoda melanoleuca ENSAMEG00000008117 I 0.000
ENSAPLG00000010675 Anas platyrhynchos ENSAPLG00000010675 I 0.000
NR2E1 Bos taurus ENSBTAG00000013991 I 0.000
ENSBTAP00000018594-D1 Bos grunniens ENSBTAP00000018594-D1 I 0.000
NR2E1 Canis familiaris ENSCAFG00000003761 I 0.000
NR2E1 Choloepus hoffmanni ENSCHOG00000007344 I 0.000
NR2E1 Callithrix jacchus ENSCJAG00000005966 I 0.000
NR2E1 Cavia porcellus ENSCPOG00000000097 I 0.000
ENSCSAG00000015143 Chlorocebus sabaeus ENSCSAG00000015143 I 0.000
nr2e1 Danio rerio ENSDARG00000017107 I 0.000
NR2E1 Dasypus novemcinctus ENSDNOG00000015478 I 0.000
NR2E1 Equus caballus ENSECAG00000018990 I 0.000
NR2E1 Erinaceus europaeus ENSEEUG00000015193 I 0.000
ENSFALG00000011755 Ficedula albicollis ENSFALG00000011755 I 0.000
NR2E1 Felis catus ENSFCAG00000002255 I 0.000
NR2E1 Homo sapiens ENSG00000112333 D 0.000
nr2e1 Gasterosteus aculeatus ENSGACG00000008934 I 0.000
NR2E1 Gallus gallus ENSGALG00000015305 I 0.000
ENSGGOG00000010051 Gorilla gorilla ENSGGOG00000010051 I 0.000
ENSGGOG00000027453 Gorilla gorilla ENSGGOG00000027453 I 0.000
ENSGMOG00000016036 Gadus morhua ENSGMOG00000016036 I 0.000
ENSLACG00000015675 Latimeria chalumnae ENSLACG00000015675 I 0.000
NR2E1 Loxodonta africana ENSLAFG00000013583 I 0.000
ENSLOCG00000016602 Lepisosteus oculatus ENSLOCG00000016602 I 0.000
ENSMGAG00000014050 Meleagris gallopavo ENSMGAG00000014050 I 0.000
NR2E1 Microcebus murinus ENSMICG00000014274 I 0.000
NR2E1 Myotis lucifugus ENSMLUG00000005543 I 0.000
NR2E1 Macaca mulatta ENSMMUG00000023767 I 0.000
NR2E1 Monodelphis domestica ENSMODG00000018005 I 0.000
ENSMPUG00000009805 Mustela putorius furo ENSMPUG00000009805 I 0.000
Nr2e1 Mus musculus ENSMUSG00000019803 D 0.000
ENSNLEG00000013646 Nomascus leucogenys ENSNLEG00000013646 I 0.000
NR2E1 Ornithorhynchus anatinus ENSOANG00000000775 I 0.000
ENSOARG00000010848 Ovis aries ENSOARG00000010848 I 0.000
NR2E1 Oryctolagus cuniculus ENSOCUG00000005853 I 0.000
NR2E1 Otolemur garnettii ENSOGAG00000011992 I 0.000
ENSONIG00000013281 Oreochromis niloticus ENSONIG00000013281 I 0.000
NR2E1 Ochotona princeps ENSOPRG00000012229 I 0.000
nr2e1 Oryzias latipes ENSORLG00000013426 I 0.000
ENSP00000357979 Macaca fascicularis ENSP00000357979 I 0.000
ENSPANG00000016092 Papio anubis ENSPANG00000016092 I 0.000
ENSPFOG00000019532 Poecilia formosa ENSPFOG00000019532 I 0.000
ENSPPYG00000016893 Pongo abelii ENSPPYG00000016893 I 0.000
ENSPSIG00000006035 Pelodiscus sinensis ENSPSIG00000006035 I 0.000
NR2E1 Pan troglodytes ENSPTRG00000018472 I 0.000
NR2E1 Pteropus vampyrus ENSPVAG00000001731 I 0.000
Nr2e1 Rattus norvegicus ENSRNOG00000050550 I 0.000
NR2E1 Sorex araneus ENSSARG00000013555 I 0.000
ENSSHAG00000017854 Sarcophilus harrisii ENSSHAG00000017854 I 0.000
NR2E1 Sus scrofa ENSSSCG00000004384 I 0.000
ENSSTOG00000007248 Ictidomys tridecemlineatus ENSSTOG00000007248 I 0.000
NR2E1 Tupaia belangeri ENSTBEG00000011676 I 0.000
NR2E1 Taeniopygia guttata ENSTGUG00000012147 I 0.000
nr2e1 Tetraodon nigroviridis ENSTNIG00000012282 I 0.000
nr2e1 Takifugu rubripes ENSTRUG00000001893 I 0.000
NR2E1 Tursiops truncatus ENSTTRG00000008863 I 0.000
ENSXMAG00000003283 Xiphophorus maculatus ENSXMAG00000003283 I 0.000
NEMVEDRAFT_v1g114090 Nematostella vectensis NEMVEDRAFT_v1g114090 I 0.000
Ogr18563 Ophisaurus gracilis Ogr18563 I 0.000
Pvit_18941 Pogona vitticeps Pvit_18941 I 0.000
nr2e1 Xenopus tropicalis XB-GENE-483554 I 0.000
nr2e1.S Xenopus laevis XB-GENE-864991 I 0.000