SNAPOd2T00007862001 (Oikopleura dioica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SNAPOd2T00007862001 T230348_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.761 0.842
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.761 0.842
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.761 0.842
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.761 0.842
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.761 0.842
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.761 0.842
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.761 0.842
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.761 0.842
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.761 0.842
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.761 0.842
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.761 0.842
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.761 0.842
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.761 0.842
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.761 0.842
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.761 0.842
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.761 0.842
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.755 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00007862001 Homeodomain 146 202

Links

Other Homeodomain family TFs
Other Oikopleura dioica TFs

292 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10001487 Chelonia mydas Cmyd_10001487 N 0.000
Cmyd_10001489 Chelonia mydas Cmyd_10001489 N 0.000
Cmyd_10001989 Chelonia mydas Cmyd_10001989 N 0.000
Cmyd_10002130 Chelonia mydas Cmyd_10002130 N 0.000
Cmyd_10003126 Chelonia mydas Cmyd_10003126 N 0.000
Cmyd_10003172 Chelonia mydas Cmyd_10003172 N 0.000
Cmyd_10003439 Chelonia mydas Cmyd_10003439 N 0.000
Cmyd_10003504 Chelonia mydas Cmyd_10003504 N 0.000
Cmyd_10003577 Chelonia mydas Cmyd_10003577 N 0.000
Cmyd_10003654 Chelonia mydas Cmyd_10003654 N 0.000
Cmyd_10003917 Chelonia mydas Cmyd_10003917 N 0.000
Cmyd_10003938 Chelonia mydas Cmyd_10003938 N 0.000
Cmyd_10004410 Chelonia mydas Cmyd_10004410 N 0.000
Cmyd_10004639 Chelonia mydas Cmyd_10004639 N 0.000
Cmyd_10004763 Chelonia mydas Cmyd_10004763 N 0.000
Cmyd_10004862 Chelonia mydas Cmyd_10004862 N 0.000
Cmyd_10005354 Chelonia mydas Cmyd_10005354 N 0.000
Cmyd_10005732 Chelonia mydas Cmyd_10005732 N 0.000
Cmyd_10006184 Chelonia mydas Cmyd_10006184 N 0.000
Cmyd_10006621 Chelonia mydas Cmyd_10006621 N 0.000
Cmyd_10006667 Chelonia mydas Cmyd_10006667 N 0.000
Cmyd_10006722 Chelonia mydas Cmyd_10006722 N 0.000
Cmyd_10006724 Chelonia mydas Cmyd_10006724 N 0.000
Cmyd_10006726 Chelonia mydas Cmyd_10006726 N 0.000
Cmyd_10007527 Chelonia mydas Cmyd_10007527 N 0.000
Cmyd_10007685 Chelonia mydas Cmyd_10007685 N 0.000
Cmyd_10008315 Chelonia mydas Cmyd_10008315 N 0.000
Cmyd_10008441 Chelonia mydas Cmyd_10008441 N 0.000
Cmyd_10008565 Chelonia mydas Cmyd_10008565 N 0.000
Cmyd_10008649 Chelonia mydas Cmyd_10008649 N 0.000
Cmyd_10008690 Chelonia mydas Cmyd_10008690 N 0.000
Cmyd_10008722 Chelonia mydas Cmyd_10008722 N 0.000
Cmyd_10009235 Chelonia mydas Cmyd_10009235 N 0.000
Cmyd_10009304 Chelonia mydas Cmyd_10009304 N 0.000
Cmyd_10009310 Chelonia mydas Cmyd_10009310 N 0.000
Cmyd_10009391 Chelonia mydas Cmyd_10009391 N 0.000
Cmyd_10009634 Chelonia mydas Cmyd_10009634 N 0.000
Cmyd_10009643 Chelonia mydas Cmyd_10009643 N 0.000
Cmyd_10009827 Chelonia mydas Cmyd_10009827 N 0.000
Cmyd_10010235 Chelonia mydas Cmyd_10010235 N 0.000
Cmyd_10010344 Chelonia mydas Cmyd_10010344 N 0.000
Cmyd_10010768 Chelonia mydas Cmyd_10010768 N 0.000
Cmyd_10011031 Chelonia mydas Cmyd_10011031 N 0.000
Cmyd_10011123 Chelonia mydas Cmyd_10011123 N 0.000
Cmyd_10011209 Chelonia mydas Cmyd_10011209 N 0.000
Cmyd_10011536 Chelonia mydas Cmyd_10011536 N 0.000
Cmyd_10011542 Chelonia mydas Cmyd_10011542 N 0.000
Cmyd_10011896 Chelonia mydas Cmyd_10011896 N 0.000
Cmyd_10012049 Chelonia mydas Cmyd_10012049 N 0.000
Cmyd_10012053 Chelonia mydas Cmyd_10012053 N 0.000
Cmyd_10012062 Chelonia mydas Cmyd_10012062 N 0.000
Cmyd_10012100 Chelonia mydas Cmyd_10012100 N 0.000
Cmyd_10012141 Chelonia mydas Cmyd_10012141 N 0.000
Cmyd_10012194 Chelonia mydas Cmyd_10012194 N 0.000
Cmyd_10012220 Chelonia mydas Cmyd_10012220 N 0.000
Cmyd_10012340 Chelonia mydas Cmyd_10012340 N 0.000
Cmyd_10012472 Chelonia mydas Cmyd_10012472 N 0.000
Cmyd_10012482 Chelonia mydas Cmyd_10012482 N 0.000
Cmyd_10012804 Chelonia mydas Cmyd_10012804 N 0.000
Cmyd_10012972 Chelonia mydas Cmyd_10012972 N 0.000
Cmyd_10013046 Chelonia mydas Cmyd_10013046 N 0.000
Cmyd_10013718 Chelonia mydas Cmyd_10013718 N 0.000
Cmyd_10013772 Chelonia mydas Cmyd_10013772 N 0.000
Cmyd_10013937 Chelonia mydas Cmyd_10013937 N 0.000
Cmyd_10014022 Chelonia mydas Cmyd_10014022 N 0.000
Cmyd_10014341 Chelonia mydas Cmyd_10014341 N 0.000
Cmyd_10014427 Chelonia mydas Cmyd_10014427 N 0.000
Cmyd_10014586 Chelonia mydas Cmyd_10014586 N 0.000
Cmyd_10014771 Chelonia mydas Cmyd_10014771 N 0.000
Cmyd_10014779 Chelonia mydas Cmyd_10014779 N 0.000
Cmyd_10014780 Chelonia mydas Cmyd_10014780 N 0.000
Cmyd_10014889 Chelonia mydas Cmyd_10014889 N 0.000
Cmyd_10014894 Chelonia mydas Cmyd_10014894 N 0.000
Cmyd_10014903 Chelonia mydas Cmyd_10014903 N 0.000
Cmyd_10014934 Chelonia mydas Cmyd_10014934 N 0.000
Cmyd_10015037 Chelonia mydas Cmyd_10015037 N 0.000
Cmyd_10015316 Chelonia mydas Cmyd_10015316 N 0.000
Cmyd_10016005 Chelonia mydas Cmyd_10016005 N 0.000
Cmyd_10016076 Chelonia mydas Cmyd_10016076 N 0.000
Cmyd_10016112 Chelonia mydas Cmyd_10016112 N 0.000
Cmyd_10016324 Chelonia mydas Cmyd_10016324 N 0.000
Cmyd_10016549 Chelonia mydas Cmyd_10016549 N 0.000
Cmyd_10016788 Chelonia mydas Cmyd_10016788 N 0.000
Cmyd_10016810 Chelonia mydas Cmyd_10016810 N 0.000
Cmyd_10016912 Chelonia mydas Cmyd_10016912 N 0.000
Cmyd_10016989 Chelonia mydas Cmyd_10016989 N 0.000
Cmyd_10017127 Chelonia mydas Cmyd_10017127 N 0.000
Cmyd_10017203 Chelonia mydas Cmyd_10017203 N 0.000
Cmyd_10017310 Chelonia mydas Cmyd_10017310 N 0.000
Cmyd_10017596 Chelonia mydas Cmyd_10017596 N 0.000
Cmyd_10017691 Chelonia mydas Cmyd_10017691 N 0.000
Cmyd_10017906 Chelonia mydas Cmyd_10017906 N 0.000
Cmyd_10017938 Chelonia mydas Cmyd_10017938 N 0.000
Cmyd_10017985 Chelonia mydas Cmyd_10017985 N 0.000
Cmyd_10018053 Chelonia mydas Cmyd_10018053 N 0.000