irx1.L (Xenopus laevis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 XB-GENE-865648 T230673_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.727 0.943
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.708 0.981
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.708 0.981
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.708 0.981
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.707 0.943
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.699 0.925
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.699 0.925
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.699 0.925
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.696 0.943
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.696 0.943
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.696 0.943
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.696 0.943
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.696 0.943
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.696 0.943
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI69342 Homeodomain 131 186
AAI69344 Homeodomain 131 186
CAB38329 Homeodomain 131 186

Links

Other Homeodomain family TFs
Other Xenopus laevis TFs

415 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL003505 Aedes aegypti AAEL003505 I 0.000
AALB004953 Anopheles albimanus AALB004953 I 0.000
Aan_R000629 Calypte anna Aan_R000629 I 0.000
AARA000896 Anopheles arabiensis AARA000896 I 0.000
AATE000001 Anopheles atroparvus AATE000001 I 0.000
ACEP18115 Atta cephalotes ACEP18115 I 0.000
ACHR007824 Anopheles christyi ACHR007824 I 0.000
ACOM039814 Anopheles coluzzii ACOM039814 I 0.000
ACUA010101 Anopheles culicifacies ACUA010101 I 0.000
ACYPI001650 Acyrthosiphon pisum ACYPI001650 I 0.000
ACYPI002386 Acyrthosiphon pisum ACYPI002386 I 0.000
ACYPI003844 Acyrthosiphon pisum ACYPI003844 I 0.000
ADAC001590 Anopheles darlingi ADAC001590 I 0.000
ADIR007430 Anopheles dirus ADIR007430 I 0.000
AEPI005437 Anopheles epiroticus AEPI005437 I 0.000
AFAF013592 Anopheles farauti AFAF013592 I 0.000
Afo_R001077 Aptenodytes forsteri Afo_R001077 I 0.000
AGAP006386 Anopheles gambiae AGAP006386 I 0.000
Alligator_sinensis_CCG021387.1 Alligator sinensis Alligator_sinensis_CCG021387.1 I 0.000
AMEC022482 Anopheles melas AMEC022482 I 0.000
AMEM012721 Anopheles merus AMEM012721 I 0.000
AMIN007981 Anopheles minimus AMIN007981 I 0.000
AQUA000947 Anopheles quadriannulatus AQUA000947 I 0.000
ASIS015799 Anopheles sinensis ASIS015799 I 0.000
ASTEI09441 Anopheles stephensi ASTEI09441 I 0.000
BGIBMGA004164 Bombyx mori BGIBMGA004164 I 0.000
BGLB006871 Biomphalaria glabrata BGLB006871 I 0.000
Brh_R003731 Buceros rhinoceros Brh_R003731 I 0.000
Cflo_10322--XP_001122040.1_APIME Camponotus floridanus Cflo_10322--XP_001122040.1_APIME I 0.000
CLEC004675 Cimex lectularius CLEC004675 I 0.000
Cmyd_10020309 Chelonia mydas Cmyd_10020309 I 0.000
CPIJ000084 Culex quinquefasciatus CPIJ000084 I 0.000
CpipJ_CPIJ000084 Culex pipiens CpipJ_CPIJ000084 I 0.000
DAPPUDRAFT_306002 Daphnia pulex DAPPUDRAFT_306002 I 0.000
JUN Anolis carolinensis ENSACAG00000007057 I 0.000
ENSAMEG00000000275 Ailuropoda melanoleuca ENSAMEG00000000275 I 0.000
ENSAMXG00000025987 Astyanax mexicanus ENSAMXG00000025987 I 0.000
ENSAPLG00000005928 Anas platyrhynchos ENSAPLG00000005928 I 0.000
JUN Bos taurus ENSBTAG00000004037 I 0.000
JUN Canis familiaris ENSCAFG00000018897 I 0.000
JUN Cavia porcellus ENSCPOG00000026377 I 0.000
ENSCSAG00000000149 Chlorocebus sabaeus ENSCSAG00000000149 I 0.000
jun Danio rerio ENSDARG00000043531 I 0.000
JUN Dasypus novemcinctus ENSDNOG00000046358 I 0.000
ENSECAG00000024055 Equus caballus ENSECAG00000024055 I 0.000
JUN Echinops telfairi ENSETEG00000010613 I 0.000
ENSFALG00000015113 Ficedula albicollis ENSFALG00000015113 I 0.000
JUN Felis catus ENSFCAG00000024972 I 0.000
JUN Homo sapiens ENSG00000177606 D 0.000
jun Gasterosteus aculeatus ENSGACG00000014608 I 0.000
JUN Gasterosteus aculeatus ENSGACG00000016273 I 0.000
JUN Gallus gallus ENSGALG00000010870 I 0.000
JUN Gorilla gorilla ENSGGOG00000003233 I 0.000
ENSGMOG00000019642 Gadus morhua ENSGMOG00000019642 I 0.000
ENSLACG00000004975 Latimeria chalumnae ENSLACG00000004975 I 0.000
JUN Loxodonta africana ENSLAFG00000012900 I 0.000
ENSLOCG00000017745 Lepisosteus oculatus ENSLOCG00000017745 I 0.000
JUN Meleagris gallopavo ENSMGAG00000011531 I 0.000
ENSMLUG00000022840 Myotis lucifugus ENSMLUG00000022840 I 0.000
ENSMMUG00000032072 Macaca mulatta ENSMMUG00000032072 I 0.000
JUN Monodelphis domestica ENSMODG00000003321 I 0.000
ENSMPUG00000020182 Mustela putorius furo ENSMPUG00000020182 I 0.000
Jun Mus musculus ENSMUSG00000052684 D 0.000
ENSNLEG00000014776 Nomascus leucogenys ENSNLEG00000014776 I 0.000
ENSOARG00000009999 Ovis aries ENSOARG00000009999 I 0.000
JUN Oryctolagus cuniculus ENSOCUG00000001212 I 0.000
JUN Otolemur garnettii ENSOGAG00000005602 I 0.000
ENSONIG00000020823 Oreochromis niloticus ENSONIG00000020823 I 0.000
ENSONIG00000021256 Oreochromis niloticus ENSONIG00000021256 I 0.000
JUN Oryzias latipes ENSORLG00000010096 I 0.000
jun Oryzias latipes ENSORLG00000014541 I 0.000
ENSP00000360266 Macaca fascicularis ENSP00000360266 I 0.000
ENSP00000360266-D1 Bos grunniens ENSP00000360266-D1 I 0.000
ENSPANG00000012317 Papio anubis ENSPANG00000012317 I 0.000
ENSPFOG00000020076 Poecilia formosa ENSPFOG00000020076 I 0.000
ENSPFOG00000020898 Poecilia formosa ENSPFOG00000020898 I 0.000
ENSPPYG00000001295 Pongo abelii ENSPPYG00000001295 I 0.000
ENSPSIG00000000515 Pelodiscus sinensis ENSPSIG00000000515 I 0.000
JUN Pan troglodytes ENSPTRG00000039670 I 0.000
JUN Pteropus vampyrus ENSPVAG00000012803 I 0.000
Jun Rattus norvegicus ENSRNOG00000026293 I 0.000
ENSSSCG00000030839 Sus scrofa ENSSSCG00000030839 I 0.000
ENSSTOG00000028549 Ictidomys tridecemlineatus ENSSTOG00000028549 I 0.000
ENSTBEG00000015475 Tupaia belangeri ENSTBEG00000015475 I 0.000
JUN Taeniopygia guttata ENSTGUG00000009693 I 0.000
JUN Tursiops truncatus ENSTTRG00000011529 I 0.000
ENSXMAG00000019940 Xiphophorus maculatus ENSXMAG00000019940 I 0.000
ENSXMAG00000019972 Xiphophorus maculatus ENSXMAG00000019972 I 0.000
Jra Drosophila melanogaster FBgn0001291 D 0.000
GF12018 Drosophila ananassae FBgn0089057 I 0.000
GG24138 Drosophila erecta FBgn0116271 I 0.000
GH21247 Drosophila grimshawi FBgn0128709 I 0.000
GI20534 Drosophila mojavensis FBgn0143270 I 0.000
GL17608 Drosophila persimilis FBgn0155211 I 0.000
GM21184 Drosophila sechellia FBgn0176065 I 0.000
GD15385 Drosophila simulans FBgn0187053 I 0.000
GJ22384 Drosophila virilis FBgn0209497 I 0.000
GK21594 Drosophila willistoni FBgn0223586 I 0.000
GE19337 Drosophila yakuba FBgn0236685 I 0.000
GA30492 Drosophila pseudoobscura FBgn0265029 I 0.000
GB53318 Apis mellifera GB53318 I 0.000
Gfo_R010199 Geospiza fortis Gfo_R010199 I 0.000
HHAL010436-PA Halyomorpha halys HHAL010436-PA I 0.000
HMEL011777 Heliconius melpomene HMEL011777 I 0.000
Hsal_13335--XP_001122040.1_APIME Harpegnathos saltator Hsal_13335--XP_001122040.1_APIME I 0.000
ISCW000545 Ixodes scapularis ISCW000545 I 0.000
KGM_06357 Danaus plexippus KGM_06357 I 0.000
L798_03990 Zootermopsis nevadensis L798_03990 I 0.000
LCUP014462 Lucilia cuprina LCUP014462 I 0.000
LDEC004906 Leptinotarsa decemlineata LDEC004906 I 0.000
LLOJ004302 Lutzomyia longipalpis LLOJ004302 I 0.000
LotgiG79422 Lottia gigantea LotgiG79422 I 0.000
MDOA000479 Musca domestica MDOA000479 I 0.000
MESCA001662 Megaselia scalaris MESCA001662 I 0.000
Myotis_brandtii_Jun_10020944 Myotis brandtii Myotis_brandtii_Jun_10020944 I 0.000
NV16554 Nasonia vitripennis NV16554 I 0.000
Ocbimv22005044m.g Octopus bimaculoides Ocbimv22005044m.g I 0.000
Ogr14876 Ophisaurus gracilis Ogr14876 I 0.000
PHUM379500 Pediculus humanus PHUM379500 I 0.000
Pvit_08017 Pogona vitticeps Pvit_08017 I 0.000
RPRC014918 Rhodnius prolixus RPRC014918 I 0.000
SINV15314 Solenopsis invicta SINV15314 I 0.000
Tal_R003549 Tyto alba Tal_R003549 I 0.000
TC006814 Tribolium castaneum TC006814 I 0.000
jun.S Xenopus laevis XB-GENE-17344878 I 0.000
jun.L Xenopus laevis XB-GENE-864843 I 0.000
XP_002931634 Xenopus tropicalis XP_002931634 I 0.000
YQE_10175 Dendroctonus ponderosae YQE_10175 I 0.000