L892_g27267 (Steinernema scapterisci)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 L892_g27267 T234775_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.762 0.804
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.753 0.839
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.753 0.839
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.753 0.839
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.745 0.804
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.745 0.804
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.745 0.804
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.745 0.804
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.745 0.804
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.745 0.804
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.744 0.786
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.744 0.786
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.744 0.786
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.718 0.786
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L892_g27267.t1 Homeodomain 595 653

Links

Other Homeodomain family TFs
Other Steinernema scapterisci TFs

375 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27446.m000475 Ricinus communis 27446.m000475 I 0.000
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.000
ERF084 Arabidopsis thaliana AT1G80580 N 0.000
BGIOSGA019608 Oryza indica BGIOSGA019608 N 0.000
Bo2g095830 Brassica oleracea Bo2g095830 N 0.000
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N 0.000
Bra008460 Brassica rapa Bra008460 N 0.000
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I 0.000
Carubv10022119m.g Capsella rubella Carubv10022119m.g N 0.000
cassava38416.m1 Manihot esculenta cassava38416.m1 I 0.000
Ca_20041 Cicer arietinum Ca_20041 I 0.000
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I 0.000
Cla015583 Citrullus lanatus Cla015583 I 0.000
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.000
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N 0.000
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.000
e_gw1.14.213.1 Physcomitrella patens e_gw1.14.213.1 N 0.000
e_gw1.145.79.1 Physcomitrella patens e_gw1.145.79.1 N 0.000
e_gw1.15.234.1 Physcomitrella patens e_gw1.15.234.1 N 0.000
e_gw1.276.69.1 Physcomitrella patens e_gw1.276.69.1 N 0.000
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I 0.000
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N 0.000
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I 0.000
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.000
GLYMA08G23074 Glycine max GLYMA08G23074 I 0.000
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I 0.000
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N 0.000
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I 0.000
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N 0.000
gw1.340.39.1 Physcomitrella patens gw1.340.39.1 N 0.000
Lus10014345.g Linum usitatissimum Lus10014345.g N 0.000
Lus10026053.g Linum usitatissimum Lus10026053.g N 0.000
MDP0000264187 Malus domestica MDP0000264187 I 0.000
mgf023662m Mimulus guttatus mgf023662m I 0.000
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.000
OMERI05G10040 Oryza meridionalis OMERI05G10040 N 0.000
ONIVA05G11840 Oryza nivara ONIVA05G11840 N 0.000
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.000
ORUFI05G12300 Oryza rufipogon ORUFI05G12300 N 0.000
OS05G0316800 Oryza sativa OS05G0316800 N 0.000
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I 0.000
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I 0.000
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I 0.000
PGSC0003DMG400000091 Solanum tuberosum PGSC0003DMG400000091 I 0.000
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N 0.000
Pm013734 Prunus mume Pm013734 I 0.000
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.000
POPTR_0013s15440 Populus trichocarpa POPTR_0013s15440 I 0.000
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.000
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.000
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.000
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.000
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N 0.000
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N 0.000
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N 0.000
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N 0.000
Solyc01g095500.2 Solanum lycopersicum Solyc01g095500.2 I 0.000
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N 0.000
TCM_027348 Theobroma cacao TCM_027348 I 0.000
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N 0.000
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N 0.000
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.000