Cmyd_10004276 (Chelonia mydas)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Cmyd_10004276 T242600_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSF2
M03324_2.00 		Homo sapiens
GAANVTTCTAGAA
TTCTAGAABNTTC		 SELEX
Jolma et al.(2013)
HSF2_1 		0.498 0.948
HSF2
M02744_2.00 		Homo sapiens
GAABGTTCTRGA
TCYAGAACVTTC		 SELEX
Jolma et al.(2010)
HSF2_dimertrimer 		0.498 0.948
HSF2
M05505_2.00 		Homo sapiens
VGAABVTTCBVGAWN
NWTCBVGAABVTTCB		 SELEX
Yin et al.(2017)
HSF2_eDBD_HT-SELEX 		0.498 0.948
HSF2
M05507_2.00 		Homo sapiens
VGAANNTTCBVGAAN
NTTCBVGAANNTTCB		 SELEX
Yin et al.(2017)
HSF2_FL_HT-SELEX 		0.498 0.948
HSF2
M09229_2.00 		Homo sapiens
VGAABVTTCKVGAN
NTCBMGAABVTTCB		 Misc
Kulakovskiy et al.(2013)
HSF2_HUMAN.H11MO.0.A 		0.498 0.948
HSF2
M10859_2.00 		Homo sapiens
VGAANNWTCB
VGAWNNTTCB		 Transfac
Matys et al.(2006)
V$HSF2_01 		0.498 0.948
HSF2
M10860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF2_02 		0.498 0.948
HSF2
M10861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF2_Q6 		0.498 0.948
HSF2
M05506_2.00 		Homo sapiens
RGAABVTTCYRGAWN
NWTCYRGAABVTTCY		 SELEX
Yin et al.(2017)
HSF2_eDBD_Methyl-HT-SELEX 		0.498 0.948
HSF2
M05508_2.00 		Homo sapiens
RGAABVTTCYRGAWN
NWTCYRGAABVTTCY		 SELEX
Yin et al.(2017)
HSF2_FL_Methyl-HT-SELEX 		0.498 0.948
Hsf2
M09231_2.00 		Mus musculus
VGAABVTTCKVGAN
NTCBMGAABVTTCB		 Misc
Kulakovskiy et al.(2013)
HSF2_MOUSE.H11MO.0.A 		0.488 0.922
hsf2
M02248_2.00 		Danio rerio
NNNWGTTCTATNN
NNATAGAACWNNN		 PBM
Weirauch et al.(2014)
pTH9010 		0.479 0.883
ANIA_08035
M02247_2.00 		Aspergillus nidulans
NNNNTTCYRN
NYRGAANNNN		 PBM
Weirauch et al.(2014)
pTH8231 		0.335 0.519
hsf-1
M02249_2.00 		Neurospora crassa
NNNTTCBDNN
NNHVGAANNN		 PBM
Weirauch et al.(2014)
pTH8857 		0.324 0.494
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10004276 HSF 1 80

Links

Other HSF family TFs
Other Chelonia mydas TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00009p00242790 Amborella trichopoda AMTR_s00009p00242790 I 0.000
BGIOSGA003819 Oryza indica BGIOSGA003819 N 0.000
BGIOSGA003821 Oryza indica BGIOSGA003821 N 0.000
BGIOSGA004292 Oryza indica BGIOSGA004292 I 0.000
BGIOSGA014565 Oryza indica BGIOSGA014565 N 0.000
BGIOSGA014566 Oryza indica BGIOSGA014566 N 0.000
BGIOSGA014567 Oryza indica BGIOSGA014567 N 0.000
BGIOSGA015472 Oryza indica BGIOSGA015472 N 0.000
BRADI2G47730 Brachypodium distachyon BRADI2G47730 I 0.000
cassava8594.m1 Manihot esculenta cassava8594.m1 I 0.000
estExt_fgenesh1_pg.C_310143 Physcomitrella patens estExt_fgenesh1_pg.C_310143 I 0.000
estExt_fgenesh1_pg.C_420092 Physcomitrella patens estExt_fgenesh1_pg.C_420092 I 0.000
F775_10624 Aegilops tauschii F775_10624 N 0.000
F775_11347 Aegilops tauschii F775_11347 I 0.000
F775_14190 Aegilops tauschii F775_14190 I 0.000
F775_18830 Aegilops tauschii F775_18830 N 0.000
GLYMA03G30940 Glycine max GLYMA03G30940 I 0.000
Gorai.001G012400 Gossypium raimondii Gorai.001G012400 I 0.000
GRMZM2G159937 Zea mays GRMZM2G159937 I 0.000
GRMZM2G172795 Zea mays GRMZM2G172795 I 0.000
GRMZM5G822829 Zea mays GRMZM5G822829 N 0.000
GSMUA_Achr11G21270_001 Musa acuminata GSMUA_Achr11G21270_001 I 0.000
GSMUA_Achr3G10120_001 Musa acuminata GSMUA_Achr3G10120_001 I 0.000
GSMUA_Achr3G26180_001 Musa acuminata GSMUA_Achr3G26180_001 I 0.000
GSMUA_Achr4G03160_001 Musa acuminata GSMUA_Achr4G03160_001 I 0.000
GSMUA_Achr5G20600_001 Musa acuminata GSMUA_Achr5G20600_001 N 0.000
GSMUA_Achr7G27600_001 Musa acuminata GSMUA_Achr7G27600_001 I 0.000
GSMUA_Achr9G18080_001 Musa acuminata GSMUA_Achr9G18080_001 I 0.000
LPERR01G24170 Leersia perrieri LPERR01G24170 I 0.000
LPERR04G17380 Leersia perrieri LPERR04G17380 N 0.000
LPERR04G17390 Leersia perrieri LPERR04G17390 N 0.000
LPERR04G17400 Leersia perrieri LPERR04G17400 I 0.000
LPERR08G11070 Leersia perrieri LPERR08G11070 N 0.000
MLOC_38470 Hordeum vulgare MLOC_38470 N 0.000
MLOC_70409 Hordeum vulgare MLOC_70409 I 0.000
OB01G30110 Oryza brachyantha OB01G30110 N 0.000
OB02G27530 Oryza brachyantha OB02G27530 N 0.000
OB04G28350 Oryza brachyantha OB04G28350 N 0.000
OB04G28380 Oryza brachyantha OB04G28380 N 0.000
OB04G28390 Oryza brachyantha OB04G28390 N 0.000
OBART01G20350 Oryza barthii OBART01G20350 N 0.000
OBART01G28080 Oryza barthii OBART01G28080 I 0.000
OBART04G21320 Oryza barthii OBART04G21320 N 0.000
OBART04G21370 Oryza barthii OBART04G21370 N 0.000
OGLUM01G23970 Oryza glumaepatula OGLUM01G23970 N 0.000
OGLUM01G32030 Oryza glumaepatula OGLUM01G32030 I 0.000
OGLUM04G21260 Oryza glumaepatula OGLUM04G21260 N 0.000
OGLUM04G21350 Oryza glumaepatula OGLUM04G21350 N 0.000
OLONG_009946 Oryza longistaminata OLONG_009946 N 0.000
OLONG_016958 Oryza longistaminata OLONG_016958 N 0.000
OLONG_016960 Oryza longistaminata OLONG_016960 N 0.000
OMERI01G18770 Oryza meridionalis OMERI01G18770 N 0.000
OMERI01G18860 Oryza meridionalis OMERI01G18860 N 0.000
OMERI04G17790 Oryza meridionalis OMERI04G17790 N 0.000
OMERI04G17820 Oryza meridionalis OMERI04G17820 N 0.000
ONIVA01G22920 Oryza nivara ONIVA01G22920 N 0.000
ONIVA01G22980 Oryza nivara ONIVA01G22980 N 0.000
ONIVA01G32020 Oryza nivara ONIVA01G32020 I 0.000
ONIVA04G19650 Oryza nivara ONIVA04G19650 N 0.000
ONIVA04G19860 Oryza nivara ONIVA04G19860 N 0.000
OPUNC01G27950 Oryza punctata OPUNC01G27950 I 0.000
OPUNC04G19030 Oryza punctata OPUNC04G19030 N 0.000
OPUNC04G19040 Oryza punctata OPUNC04G19040 N 0.000
ORGLA01G0232100 Oryza glaberrima ORGLA01G0232100 I 0.000
ORGLA04G0183800 Oryza glaberrima ORGLA04G0183800 N 0.000
ORGLA04G0183900 Oryza glaberrima ORGLA04G0183900 N 0.000
ORGLA11G0077500 Oryza glaberrima ORGLA11G0077500 N 0.000
ORUFI01G23050 Oryza rufipogon ORUFI01G23050 N 0.000
ORUFI01G31210 Oryza rufipogon ORUFI01G31210 I 0.000
ORUFI04G22890 Oryza rufipogon ORUFI04G22890 N 0.000
ORUFI04G22910 Oryza rufipogon ORUFI04G22910 N 0.000
ORUFI11G09150 Oryza rufipogon ORUFI11G09150 N 0.000
OS01G0705700 Oryza sativa OS01G0705700 I 0.000
OS04G0557200 Oryza sativa OS04G0557200 N 0.000
OS04G0557800 Oryza sativa OS04G0557800 N 0.000
Pavir.Cb00833 Panicum virgatum Pavir.Cb00833 N 0.000
Pavir.Gb01093 Panicum virgatum Pavir.Gb01093 N 0.000
Pavir.J12952 Panicum virgatum Pavir.J12952 I 0.000
Pavir.J34298 Panicum virgatum Pavir.J34298 N 0.000
Pavir.J39604 Panicum virgatum Pavir.J39604 I 0.000
PDK_20s1464821g001 Phoenix dactylifera PDK_20s1464821g001 I 0.000
Sb03g032420 Sorghum bicolor Sb03g032420 I 0.000
Sb06g025020 Sorghum bicolor Sb06g025020 N 0.000
Sb06g025040 Sorghum bicolor Sb06g025040 I 0.000
Sb06g025060 Sorghum bicolor Sb06g025060 I 0.000
Si000845m.g Setaria italica Si000845m.g I 0.000
Si004795m.g Setaria italica Si004795m.g I 0.000
Si012401m.g Setaria italica Si012401m.g I 0.000
TCM_037645 Theobroma cacao TCM_037645 I 0.000
TRAES3BF036800040CFD_g Triticum aestivum TRAES3BF036800040CFD_g I 0.000
TRAES3BF058400020CFD_g Triticum aestivum TRAES3BF058400020CFD_g I 0.000
Traes_2AL_4F71A8FB4 Triticum aestivum Traes_2AL_4F71A8FB4 N 0.000
Traes_2DL_099D4CA9B Triticum aestivum Traes_2DL_099D4CA9B N 0.000
TRIUR3_18279 Triticum urartu TRIUR3_18279 N 0.000
TRIUR3_26157 Triticum urartu TRIUR3_26157 N 0.000
TRIUR3_35186 Triticum urartu TRIUR3_35186 N 0.000