CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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irf6
(
Oryzias latipes
)
IRF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00605 (IRF)
IPR001346
ENSORLG00000000511
T244291_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
IRF6
M02254_2.00
Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN
PBM
Weirauch et al.(2014)
pTH9210
0.867
0.867
IRF6
M02253_2.00
Gallus gallus
NNMCNAAWNN
NNWTTNGKNN
PBM
Weirauch et al.(2014)
pTH9178
0.857
0.857
Irf6
M00176_2.00
Mus musculus
NNNHGADASN
NSTHTCDNNN
PBM
Badis et al.(2009)
Irf6_3803
0.838
0.838
irf6.2
M02259_2.00
Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN
PBM
Weirauch et al.(2014)
pTH9302
0.838
0.838
IRF6
M05527_2.00
Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY
SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX
0.838
0.838
IRF6
M05529_2.00
Homo sapiens
ACCGAAACT
AGTTTCGGT
SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX
0.838
0.838
IRF6
M05528_2.00
Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY
SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX
0.838
0.838
IRF6
M05530_2.00
Homo sapiens
ACCGAWACY
RGTWTCGGT
SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX
0.838
0.838
irf5.L
M02260_2.00
Xenopus laevis
VNCGADACHN
NDGTHTCGNB
PBM
Weirauch et al.(2014)
pTH9367
0.762
0.762
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000000629
IRF
16
121
RLKPWLVAQVNSGRYPGLEWIDREAMRFKIPWKHATRHTPQHEDEDTIFKAWAVETGKFQEGVDEPDPAKWKAQLRCALNKSREFNLVYDGTKEVPMNPLKIYDVC
Links
Other
IRF
family TFs
Other
Oryzias latipes
TFs
92 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACRE_066760
Acremonium chrysogenum
ACRE_066760
N
Bcin13g03660
Botrytis cinerea
Bcin13g03660
N
CFIO01_13490
Colletotrichum fioriniae
CFIO01_13490
N
CMQ_7755
Grosmannia clavigera
CMQ_7755
N
CSUB01_00741
Colletotrichum sublineola
CSUB01_00741
N
EPUS_02971
Endocarpon pusillum
EPUS_02971
N
estExt_fgenesh1_pg.C_40017
Cryphonectria parasitica
estExt_fgenesh1_pg.C_40017
N
EV44_g2543
Erysiphe necator
EV44_g2543
N
FGRRES_02718
Fusarium graminearum
FGRRES_02718
N
FPSE_06488
Fusarium pseudograminearum
FPSE_06488
N
GGTG_06715
Gaeumannomyces graminis
GGTG_06715
N
GLRG_11249
Colletotrichum graminicola
GLRG_11249
N
MBM_06419
Marssonina brunnea
MBM_06419
N
MGG_01130
Magnaporthe oryzae
MGG_01130
N
OIDMADRAFT_123417
Oidiodendron maius
OIDMADRAFT_123417
N
S40285_03706
Stachybotrys chlorohalonata
S40285_03706
N
S40288_09128
Stachybotrys chartarum
S40288_09128
N
SBOR_3943
Sclerotinia borealis
SBOR_3943
N
SS1G_02497
Sclerotinia sclerotiorum
SS1G_02497
N
VDAG_09672
Verticillium dahliae
VDAG_09672
N
VDBG_07807
Verticillium alfalfae
VDBG_07807
N
VDBG_07807
Verticillium albo atrum
VDBG_07807
N
VHEMI07500
Torrubiella hemipterigena
VHEMI07500
N