Sakowv30022795m.g (Saccoglossus kowalevskii)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Sakowv30022795m.g T244610_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF2
M05545_2.00 		Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX 		0.724 0.724
IRF2
M02691_2.00 		Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS		 SELEX
Mathelier et al.(2014)
MA0051.1 		0.724 0.724
IRF2
M09237_2.00 		Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A 		0.724 0.724
IRF2
M09596_2.00 		Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN		 Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985 		0.724 0.724
IRF2
M10892_2.00 		Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC		 Transfac
Matys et al.(2006)
V$IRF2_01 		0.724 0.724
IRF2
M10893_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF2_Q6 		0.724 0.724
IRF2
M05546_2.00 		Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX 		0.724 0.724
Irf2
M00805_2.00 		Mus musculus
NDWNHGAAAV
BTTTCDNWHN		 PBM
Weirauch et al.(2013)
pTH2835 		0.714 0.714
Irf2
M09245_2.00 		Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23952096_peptide IRF 53 159

Links

Other IRF family TFs
Other Saccoglossus kowalevskii TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29813.m001508 Ricinus communis 29813.m001508 I
30138.m004061 Ricinus communis 30138.m004061 I
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I
AGL94 Arabidopsis thaliana AT1G69540 N
AGL30 Arabidopsis thaliana AT2G03060 I
BGIOSGA035654 Oryza indica BGIOSGA035654 N
Bo6g109050 Brassica oleracea Bo6g109050 I
Bo7g080890 Brassica oleracea Bo7g080890 I
Bo8g068060 Brassica oleracea Bo8g068060 I
Bo8g104060 Brassica oleracea Bo8g104060 I
Bo9g072860 Brassica oleracea Bo9g072860 N
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I
Bra004393 Brassica rapa Bra004393 I
Bra016544 Brassica rapa Bra016544 I
Bra017404 Brassica rapa Bra017404 I
Bra024792 Brassica rapa Bra024792 I
Bra025685 Brassica rapa Bra025685 I
Bra031049 Brassica rapa Bra031049 I
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I
Carubv10017440m.g Capsella rubella Carubv10017440m.g I
Carubv10020210m.g Capsella rubella Carubv10020210m.g I
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I
cassava17346.m1 Manihot esculenta cassava17346.m1 I
Ca_16376 Cicer arietinum Ca_16376 I
Ca_18082 Cicer arietinum Ca_18082 I
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I
Cla010361 Citrullus lanatus Cla010361 I
Cucsa.284960 Cucumis sativus Cucsa.284960 I
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N
F775_13266 Aegilops tauschii F775_13266 I
GLYMA02G12131 Glycine max GLYMA02G12131 N
GLYMA07G35610 Glycine max GLYMA07G35610 N
GLYMA17G10941 Glycine max GLYMA17G10941 I
GLYMA20G04500 Glycine max GLYMA20G04500 N
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I
LPERR11G18320 Leersia perrieri LPERR11G18320 N
Lus10019089.g Linum usitatissimum Lus10019089.g I
Lus10030450.g Linum usitatissimum Lus10030450.g I
Lus10034464.g Linum usitatissimum Lus10034464.g I
Lus10036761.g Linum usitatissimum Lus10036761.g N
Lus10037166.g Linum usitatissimum Lus10037166.g N
MDP0000146231 Malus domestica MDP0000146231 I
MDP0000146415 Malus domestica MDP0000146415 I
MDP0000147667 Malus domestica MDP0000147667 I
MDP0000773068 Malus domestica MDP0000773068 I
MDP0000919323 Malus domestica MDP0000919323 I
mgf000945m Mimulus guttatus mgf000945m I
mgf004425m Mimulus guttatus mgf004425m I
MLOC_11474 Hordeum vulgare MLOC_11474 I
MTR_4g108720 Medicago truncatula MTR_4g108720 I
MTR_5g041650 Medicago truncatula MTR_5g041650 I
OBART11G21780 Oryza barthii OBART11G21780 N
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N
OLONG_008007 Oryza longistaminata OLONG_008007 N
OMERI11G18020 Oryza meridionalis OMERI11G18020 N
OPUNC11G18320 Oryza punctata OPUNC11G18320 N
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N
OS11G0658700 Oryza sativa OS11G0658700 N
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I
Pavir.J04162 Panicum virgatum Pavir.J04162 I
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I
PK03147.1 Cannabis sativa PK03147.1 I
Pm006479 Prunus mume Pm006479 I
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I
Sb05g025970 Sorghum bicolor Sb05g025970 I
Si028357m.g Setaria italica Si028357m.g N
TCM_011687 Theobroma cacao TCM_011687 I
TCM_014051 Theobroma cacao TCM_014051 I
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I
TRIUR3_33223 Triticum urartu TRIUR3_33223 I
AGL65 Vitis vinifera VIT_17s0000g06340 I