CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo3g135950
(
Brassica oleracea
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Bo3g135950
T244976_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g135950.1
LOB
38
136
ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILENLDEVQRPEAMKSIIFQSYVRDRNPVHGCLGITQQLQYMIWVAEEELKAVNS
Links
Other
LOB
family TFs
Other
Brassica oleracea
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LBD27
Arabidopsis thaliana
AT3G47870
N
0.939
Bo1g072490
Brassica oleracea
Bo1g072490
N
0.889
Bostr.18473s0162
Boechera stricta
Bostr.18473s0162
N
0.869
Bra018102
Brassica rapa
Bra018102
N
0.990
Cagra.13768s0012
Capsella grandiflora
Cagra.13768s0012
N
0.939
Carubv10018376m.g
Capsella rubella
Carubv10018376m.g
N
0.939
evm.TU.supercontig_17.185
Carica papaya
evm.TU.supercontig_17.185
N
0.707
SCP
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5001275
N
0.929
GSMUA_Achr5G15570_001
Musa acuminata
GSMUA_Achr5G15570_001
N
0.786
Thhalv10011007m.g
Eutrema salsugineum
Thhalv10011007m.g
N
0.939