ORGLA03G0035800 (Oryza glaberrima)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 ORGLA03G0035800 T245719_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.717 0.717
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.717 0.717
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA03G0035800.1 LOB 13 112

Links

Other LOB family TFs
Other Oryza glaberrima TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.717
LBD16 Arabidopsis thaliana AT2G42430 D 0.717
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.727
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.727
BGIOSGA011866 Oryza indica BGIOSGA011866 I 1.000
Bo4g016000 Brassica oleracea Bo4g016000 I 0.717
Bo4g191530 Brassica oleracea Bo4g191530 I 0.717
Bo8g092560 Brassica oleracea Bo8g092560 I 0.707
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.717
Bra004693 Brassica rapa Bra004693 I 0.717
Bra016877 Brassica rapa Bra016877 I 0.707
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.758
BRADI1G75120 Brachypodium distachyon BRADI1G75120 N 0.879
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.727
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.717
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.717
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.707
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.717
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.707
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.707
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.737
GRMZM2G092483 Zea mays GRMZM2G092483 I 0.909
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.727
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.707
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.717
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.727
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.727
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.727
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.747
LPERR03G03460 Leersia perrieri LPERR03G03460 I 0.970
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.727
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.707
MDP0000131964 Malus domestica MDP0000131964 I 0.717
MLOC_10783 Hordeum vulgare MLOC_10783 N 0.919
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.758
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.733
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.771
OB02G44330 Oryza brachyantha OB02G44330 I 0.737
OB03G13880 Oryza brachyantha OB03G13880 I 0.990
OB03G13890 Oryza brachyantha OB03G13890 I 0.727
OBART03G03820 Oryza barthii OBART03G03820 I 0.879
OBART03G03830 Oryza barthii OBART03G03830 I 0.727
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.727
OGLUM03G03700 Oryza glumaepatula OGLUM03G03700 I 0.879
OLONG_020840 Oryza longistaminata OLONG_020840 N 0.899
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.727
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.727
OMERI07G01670 Oryza meridionalis OMERI07G01670 N 0.899
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.727
ONIVA03G03570 Oryza nivara ONIVA03G03570 I 0.879
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.727
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.717
OPUNC03G03510 Oryza punctata OPUNC03G03510 I 1.000
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.727
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.707
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.727
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.727
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.727
ORUFI03G03540 Oryza rufipogon ORUFI03G03540 I 0.879
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.727
OS02G0820500 Oryza sativa OS02G0820500 I 0.727
OS03G0149000 Oryza sativa OS03G0149000 I 1.000
OS03G0149100 Oryza sativa OS03G0149100 I 0.727
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.737
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.727
Pavir.Ib00282 Panicum virgatum Pavir.Ib00282 I 0.899
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.727
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.727
Pavir.J24246 Panicum virgatum Pavir.J24246 I 0.909
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.737
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.707
Pm020629 Prunus mume Pm020629 I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.707
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.727
Sb01g047000 Sorghum bicolor Sb01g047000 I 0.899
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.737
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.717
Si019578m.g Setaria italica Si019578m.g I 0.737
Si037727m.g Setaria italica Si037727m.g I 0.909
Si040019m.g Setaria italica Si040019m.g I 0.727
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.717
Traes_4AL_3BA1D51E2 Triticum aestivum Traes_4AL_3BA1D51E2 N 0.919
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.758
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.758
Traes_4BL_F71DE14F7 Triticum aestivum Traes_4BL_F71DE14F7 N 0.919
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.707
Traes_4BS_B43A99154 Triticum aestivum Traes_4BS_B43A99154 N 0.919
Traes_4DL_05F87867C Triticum aestivum Traes_4DL_05F87867C N 0.909
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.758
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.737
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.737
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.737
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.727