ORUFI03G03540 (Oryza rufipogon)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 ORUFI03G03540 T245756_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.722 0.722
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.722 0.722
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI03G03540.1 LOB 13 103

Links

Other LOB family TFs
Other Oryza rufipogon TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29634.m002156 Ricinus communis 29634.m002156 N 0.000
Aquca_010_00478 Aquilegia coerulea Aquca_010_00478 N 0.000
cassava18797.valid.m1 Manihot esculenta cassava18797.valid.m1 N 0.000
cassava35611.valid.m1 Manihot esculenta cassava35611.valid.m1 N 0.000
Cucsa.127390 Cucumis sativus Cucsa.127390 N 0.000
Cucsa.201400 Cucumis sativus Cucsa.201400 N 0.000
Eucgr.I02451 Eucalyptus grandis Eucgr.I02451 N 0.000
evm.TU.supercontig_6.108 Carica papaya evm.TU.supercontig_6.108 N 0.000
gene14780-v1.0-hybrid Fragaria vesca gene14780-v1.0-hybrid N 0.000
Gorai.003G015400 Gossypium raimondii Gorai.003G015400 N 0.000
Gorai.008G068100 Gossypium raimondii Gorai.008G068100 N 0.000
Lus10024014.g Linum usitatissimum Lus10024014.g N 0.000
Lus10041740.g Linum usitatissimum Lus10041740.g N 0.000
MDP0000575908 Malus domestica MDP0000575908 N 0.000
mgf021185m Mimulus guttatus mgf021185m N 0.000
PGSC0003DMG400014900 Solanum tuberosum PGSC0003DMG400014900 N 0.000
PK13108.1 Cannabis sativa PK13108.1 N 0.000
Pm026616 Prunus mume Pm026616 N 0.000
POPTR_0007s12760 Populus trichocarpa POPTR_0007s12760 N 0.000
PRUPE_ppa003124mg Prunus persica PRUPE_ppa003124mg N 0.000
SapurV1A.0254s0130 Salix purpurea SapurV1A.0254s0130 N 0.000
SapurV1A.1131s0040 Salix purpurea SapurV1A.1131s0040 N 0.000
SapurV1A.4211s0010 Salix purpurea SapurV1A.4211s0010 N 0.000
Solyc02g085340.1 Solanum lycopersicum Solyc02g085340.1 N 0.000
TCM_000399 Theobroma cacao TCM_000399 N 0.000
VIT_04s0023g01660 Vitis vinifera VIT_04s0023g01660 N 0.000