CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

30174.m008898 *(Ricinus communis)* LOB
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03195 (DUF260)	IPR004883	30174.m008898	T246432_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LBD18 M06962_2.00	Arabidopsis thaliana	SCGGRRAWHVHGSMRNNDN	NHNNYKSCDBDWTYYCCGS	Dap-seq OMalley et al.(2016) LBD18_col_a	0.929	0.929
LBD18 M06963_2.00	Arabidopsis thaliana	CDBDWTTTMHGSHRN	NYDSCDKAAAWHVHG	Dap-seq OMalley et al.(2016) LBD18_colamp_a	0.929	0.929
LBD30 M01066_2.00	Arabidopsis thaliana	BVWWWHVNGG	CCNBDWWWBV	PBM Sullivan et al.(2014) pTH7467	0.869	0.869
LBD30 M01067_2.00	Arabidopsis thaliana	VWWWNVNGGD	HCCNBNWWWB	PBM Sullivan et al.(2014) pTH7616	0.869	0.869
LBD19 M06960_2.00	Arabidopsis thaliana	CCKKAAAWHMMGSND	HNSCKKDWTTTMMGG	Dap-seq OMalley et al.(2016) LBD19_col_a	0.778	0.778
LBD19 M06961_2.00	Arabidopsis thaliana	WWYCCGG	CCGGRWW	Dap-seq OMalley et al.(2016) LBD19_colamp_a	0.778	0.778
LBD16 M00870_2.00	Arabidopsis thaliana	DNHHYVCGG	CCGBRDDNH	PBM Franco-Zorrilla et al.(2014) LBD16	0.768	0.768
LBD16 M06958_2.00	Arabidopsis thaliana	SCGGAAAWNVCGSMR	YKSCGBNWTTTCCGS	Dap-seq OMalley et al.(2016) ASL18_col_a	0.768	0.768
LBD16 M06959_2.00	Arabidopsis thaliana	SCDBDWTTYVCGSHDN	NHDSCGBRAAWHVHGS	Dap-seq OMalley et al.(2016) ASL18_colamp_a	0.768	0.768
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
30174.m008898	LOB	27	126	PCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQA

Links
Other LOB family TFs
Other *Ricinus communis* TFs

396 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
CAGL0L01903g	Candida glabrata	CAGL0L01903g	I	0.000
MGG_13629	Magnaporthe oryzae	MGG_13629	N	0.000
Pc16g08580	Penicillium chrysogenum	Pc16g08580	N	0.000
PCH_Pc16g08580	Penicillium rubens	PCH_Pc16g08580	N	0.000
PFICI_09707	Pestalotiopsis fici	PFICI_09707	N	0.000
PMAA_073700	Penicillium marneffei	PMAA_073700	N	0.000
S40288_10068	Stachybotrys chartarum	S40288_10068	N	0.000
TSTA_094160	Talaromyces stipitatus	TSTA_094160	N	0.000