POPTR_0010s23970 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0010s23970 T249678_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.881 0.667
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.881 0.667
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.881 0.667
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.838 0.639
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s23970.1 MADF 79 159

Links

Other MADF family TFs
Other Populus trichocarpa TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10000498 Chelonia mydas Cmyd_10000498 I
MECP2 Anolis carolinensis ENSACAG00000012519 I
ENSAMEG00000018448 Ailuropoda melanoleuca ENSAMEG00000018448 I
ENSAMXG00000017019 Astyanax mexicanus ENSAMXG00000017019 I
MECP2 Bos taurus ENSBTAG00000047855 I
MECP2 Canis familiaris ENSCAFG00000019440 I
MECP2 Callithrix jacchus ENSCJAG00000016796 I
MECP2 Cavia porcellus ENSCPOG00000012579 I
ENSCSAG00000006798 Chlorocebus sabaeus ENSCSAG00000006798 I
mecp2 Danio rerio ENSDARG00000014218 I
MECP2 Dasypus novemcinctus ENSDNOG00000013419 I
Mecp2 Dipodomys ordii ENSDORG00000014978 I
MECP2 Equus caballus ENSECAG00000018208 I
ENSEEUG00000003070 Erinaceus europaeus ENSEEUG00000003070 I
ENSEEUG00000015025 Erinaceus europaeus ENSEEUG00000015025 I
MECP2 Echinops telfairi ENSETEG00000009825 I
MECP2 Felis catus ENSFCAG00000011389 I
MECP2 Homo sapiens ENSG00000169057 D
mecp2 Gasterosteus aculeatus ENSGACG00000000798 I
MECP2 Gorilla gorilla ENSGGOG00000000222 I
MECP2 Loxodonta africana ENSLAFG00000016292 I
ENSLOCG00000014725 Lepisosteus oculatus ENSLOCG00000014725 I
ENSMEUG00000002761 Macropus eugenii ENSMEUG00000002761 I
MECP2 Microcebus murinus ENSMICG00000005149 I
MECP2 Myotis lucifugus ENSMLUG00000014297 I
MECP2 Macaca mulatta ENSMMUG00000018704 I
MECP2 Monodelphis domestica ENSMODG00000011643 I
ENSMPUG00000009072 Mustela putorius furo ENSMPUG00000009072 I
Mecp2 Mus musculus ENSMUSG00000031393 D
ENSNLEG00000013783 Nomascus leucogenys ENSNLEG00000013783 I
MECP2 Ornithorhynchus anatinus ENSOANG00000011024 I
ENSOARG00000005806 Ovis aries ENSOARG00000005806 I
MECP2 Oryctolagus cuniculus ENSOCUG00000013147 I
MECP2 Otolemur garnettii ENSOGAG00000015115 I
ENSONIG00000000809 Oreochromis niloticus ENSONIG00000000809 I
mecp2 Oryzias latipes ENSORLG00000020117 I
ENSP00000395535 Macaca fascicularis ENSP00000395535 I
ENSP00000395535-D1 Bos grunniens ENSP00000395535-D1 I
ENSPANG00000011691 Papio anubis ENSPANG00000011691 I
MECP2 Procavia capensis ENSPCAG00000011826 I
ENSPFOG00000002307 Poecilia formosa ENSPFOG00000002307 I
ENSPMAG00000007809 Petromyzon marinus ENSPMAG00000007809 I
ENSPPYG00000020866 Pongo abelii ENSPPYG00000020866 I
ENSPSIG00000002254 Pelodiscus sinensis ENSPSIG00000002254 I
MECP2 Pan troglodytes ENSPTRG00000022424 I
MECP2 Pteropus vampyrus ENSPVAG00000000472 I
Mecp2 Rattus norvegicus ENSRNOG00000056659 I
MECP2 Sorex araneus ENSSARG00000012925 I
ENSSHAG00000007851 Sarcophilus harrisii ENSSHAG00000007851 I
ENSSSCG00000012796 Sus scrofa ENSSSCG00000012796 I
ENSSTOG00000006094 Ictidomys tridecemlineatus ENSSTOG00000006094 I
mecp2 Tetraodon nigroviridis ENSTNIG00000005114 I
mecp2 Takifugu rubripes ENSTRUG00000006419 I
ENSTSYG00000007420 Tarsius syrichta ENSTSYG00000007420 I
MECP2 Tursiops truncatus ENSTTRG00000004653 I
ENSXMAG00000003522 Xiphophorus maculatus ENSXMAG00000003522 I
Myotis_brandtii_IRAK1_10010673 Myotis brandtii Myotis_brandtii_IRAK1_10010673 I
Ogr09995 Ophisaurus gracilis Ogr09995 I
Pvit_16673 Pogona vitticeps Pvit_16673 I
mecp2 Xenopus tropicalis XB-GENE-494740 I
mecp2.S Xenopus laevis XB-GENE-494744 I