Cagra.20992s0002 (Capsella grandiflora)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cagra.20992s0002 T250609_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.868 0.816
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.832 0.669
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.832 0.669
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.20992s0002.1.p MADF 84 152
Cagra.20992s0002.1.p MADF 404 476

Links

Other MADF family TFs
Other Capsella grandiflora TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29576.m000223 Ricinus communis 29576.m000223 I 0.932
30068.m002635 Ricinus communis 30068.m002635 I 0.866
30206.m000769 Ricinus communis 30206.m000769 I 0.920
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.825
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.876
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.878
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.832
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.868
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.847
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.883
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.882
Bo2g091240 Brassica oleracea Bo2g091240 I 0.907
Bo6g049430 Brassica oleracea Bo6g049430 I 0.836
Bo6g083690 Brassica oleracea Bo6g083690 I 0.971
Bo6g120870 Brassica oleracea Bo6g120870 I 0.968
Bo8g027460 Brassica oleracea Bo8g027460 I 0.915
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.971
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.910
Bra003702 Brassica rapa Bra003702 I 0.894
Bra003703 Brassica rapa Bra003703 I 0.971
Bra008285 Brassica rapa Bra008285 I 0.968
Bra015716 Brassica rapa Bra015716 I 0.968
Bra036731 Brassica rapa Bra036731 I 0.915
Bra040010 Brassica rapa Bra040010 I 0.836
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.877
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.895
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.936
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.850
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.838
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.936
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.971
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.941
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.960
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.949
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.878
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.878
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.878
Ca_04385 Cicer arietinum Ca_04385 I 0.946
Ca_04386 Cicer arietinum Ca_04386 I 0.944
Ca_25135 Cicer arietinum Ca_25135 I 0.959
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.939
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.930
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.887
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.899
Cla001992 Citrullus lanatus Cla001992 I 0.941
Cla005046 Citrullus lanatus Cla005046 I 0.878
Cla007910 Citrullus lanatus Cla007910 I 0.909
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.891
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.941
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.914
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.959
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.916
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.882
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.871
F775_24861 Aegilops tauschii F775_24861 N 0.856
F775_26337 Aegilops tauschii F775_26337 I 0.896
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.832
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.889
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.916
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.939
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.891
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.960
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.834
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.850
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.834
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.942
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.957
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.962
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.957
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.940
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.888
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.926
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.872
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.926
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.926
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.867
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.831
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.872
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.858
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.879
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.871
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.826
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.881
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.889
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.891
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.929
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.888
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.893
MDP0000156139 Malus domestica MDP0000156139 I 0.945
MDP0000451038 Malus domestica MDP0000451038 I 0.874
MDP0000451107 Malus domestica MDP0000451107 I 0.943
MDP0000701272 Malus domestica MDP0000701272 I 0.895
mgf004276m Mimulus guttatus mgf004276m I 0.888
mgf015314m Mimulus guttatus mgf015314m N 0.876
mgf018892m Mimulus guttatus mgf018892m N 0.928
mgf021983m Mimulus guttatus mgf021983m I 0.940
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.892
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.856
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.855
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.938
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.939
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.958
OB02G33250 Oryza brachyantha OB02G33250 I 0.852
OB04G27270 Oryza brachyantha OB04G27270 I 0.888
OBART02G25970 Oryza barthii OBART02G25970 I 0.858
OBART04G20290 Oryza barthii OBART04G20290 I 0.883
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.847
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.875
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.883
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.882
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.897
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.875
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.882
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.865
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.883
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.847
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.882
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.832
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.888
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.893
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.887
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.939
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.930
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.899
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.858
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.875
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.847
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.865
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.883
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.882
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.835
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.877
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.868
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.827
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.862
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.926
PK24122.1 Cannabis sativa PK24122.1 I 0.940
PK26613.1 Cannabis sativa PK26613.1 I 0.910
Pm022570 Prunus mume Pm022570 I 0.910
Pm022572 Prunus mume Pm022572 I 0.941
Pm024289 Prunus mume Pm024289 I 0.871
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.910
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.871
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.939
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.938
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.940
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.939
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.867
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.894
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.871
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.941
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.901
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.858
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.936
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.923
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.910
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.871
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.937
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.933
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.880
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.937
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.875
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.831
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.867
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.971
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.847
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.818
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.818
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.847
Si012121m.g Setaria italica Si012121m.g I 0.877
Si016578m.g Setaria italica Si016578m.g I 0.827
Si034382m.g Setaria italica Si034382m.g I 0.862
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.926
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.847
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.929
TCM_001348 Theobroma cacao TCM_001348 I 0.919
TCM_015563 Theobroma cacao TCM_015563 I 0.878
TCM_035565 Theobroma cacao TCM_035565 I 0.946
TCM_035571 Theobroma cacao TCM_035571 I 0.923
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.845
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.971
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.888
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.883
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.896
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.888
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.877
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.920
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.949