Ciclev10010595m.g (Citrus clementina)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Ciclev10010595m.g T250641_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.948 0.825
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.948 0.825
PK15172.1
M01263_2.00 		Cannabis sativa
NNNGTWAHWN
NWDTWACNNN		 PBM
Lambert et al.(2019)
pTH10125 		0.886 0.698
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10010595m MADF 412 477

Links

Other MADF family TFs
Other Citrus clementina TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29739.m003611 Ricinus communis 29739.m003611 I 0.949
AMTR_s00001p00251940 Amborella trichopoda AMTR_s00001p00251940 I 0.868
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I 0.877
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.898
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.948
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.890
Bo6g083670 Brassica oleracea Bo6g083670 I 0.891
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.935
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.962
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.914
evm.TU.supercontig_126.31 Carica papaya evm.TU.supercontig_126.31 I 0.929
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I 0.891
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.947
GLYMA15G12591 Glycine max GLYMA15G12591 N 0.812
Gorai.001G020300 Gossypium raimondii Gorai.001G020300 I 0.906
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.936
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.954
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.948
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.942
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.963
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.949
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I 0.855
LjSGA_134698.1 Lotus japonicus LjSGA_134698.1 I 0.848
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.944
Lus10028584.g Linum usitatissimum Lus10028584.g I 0.873
MDP0000122269 Malus domestica MDP0000122269 I 0.907
MDP0000284819 Malus domestica MDP0000284819 N 0.838
MDP0000287231 Malus domestica MDP0000287231 N 0.849
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.907
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.895
MLOC_25460 Hordeum vulgare MLOC_25460 I 0.921
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.845
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.856
MTR_2g026725 Medicago truncatula MTR_2g026725 I 0.815
OB02G10400 Oryza brachyantha OB02G10400 I 0.950
OBART02G00380 Oryza barthii OBART02G00380 I 0.948
OBART10G15720 Oryza barthii OBART10G15720 I 0.828
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.948
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.948
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.948
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.948
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.887
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.971
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.948
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.898
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.948
OS02G0104500 Oryza sativa OS02G0104500 D 0.948
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.954
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.954
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.876
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I 0.897
Pavir.Ib03751 Panicum virgatum Pavir.Ib03751 I 0.855
Pavir.J25029 Panicum virgatum Pavir.J25029 I 0.864
PGSC0003DMG400013300 Solanum tuberosum PGSC0003DMG400013300 N 0.814
PK14727.1 Cannabis sativa PK14727.1 I 0.890
PK15172.1 Cannabis sativa PK15172.1 D 0.886
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.955
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.950
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.949
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.950
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.950
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.877
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.955
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.954
SELMODRAFT_14382 Selaginella moellendorffii SELMODRAFT_14382 I 0.859
SELMODRAFT_24518 Selaginella moellendorffii SELMODRAFT_24518 I 0.859
Si033157m.g Setaria italica Si033157m.g I 0.939
TCM_037381 Theobroma cacao TCM_037381 I 0.930
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.907
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.908
Traes_1DL_9EFDBD741 Triticum aestivum Traes_1DL_9EFDBD741 I 0.835
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I 0.845
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.935
TRIUR3_29570 Triticum urartu TRIUR3_29570 I 0.895
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.935
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.953