AGL31 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT5G65050 T252937_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.894 0.894
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.851 0.851
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.851 0.851
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.851 0.851
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G65050.1 MADS box 10 56
AT5G65050.2 MADS box 10 56
AT5G65050.3 MADS box 10 56
AT5G65050.5 MADS box 10 56

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004627 Ricinus communis 29929.m004627 I 0.000
30138.m003942 Ricinus communis 30138.m003942 I 0.000
30147.m014478 Ricinus communis 30147.m014478 I 0.000
30174.m009082 Ricinus communis 30174.m009082 I 0.000
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.000
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.000
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.000
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.000
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.000
Aquca_040_00115 Aquilegia coerulea Aquca_040_00115 N 0.000
SPL6 Arabidopsis thaliana AT1G69170 I 0.000
SPL13A Arabidopsis thaliana AT5G50570 I 0.000
SPL13A Arabidopsis thaliana AT5G50670 D 0.000
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.000
Bo3g024180 Brassica oleracea Bo3g024180 I 0.000
Bo3g042890 Brassica oleracea Bo3g042890 I 0.000
Bo6g031220 Brassica oleracea Bo6g031220 I 0.000
Bo9g097630 Brassica oleracea Bo9g097630 I 0.000
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.000
Bra022766 Brassica rapa Bra022766 I 0.000
Bra039656 Brassica rapa Bra039656 I 0.000
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.000
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.000
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.000
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.000
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.000
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.000
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.000
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.000
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.000
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.000
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.000
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.000
Ca_01426 Cicer arietinum Ca_01426 I 0.000
Ca_05711 Cicer arietinum Ca_05711 I 0.000
Ca_19449 Cicer arietinum Ca_19449 I 0.000
Ca_24733 Cicer arietinum Ca_24733 I 0.000
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.000
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.000
Cla001541 Citrullus lanatus Cla001541 I 0.000
Cla002666 Citrullus lanatus Cla002666 I 0.000
Cla004156 Citrullus lanatus Cla004156 I 0.000
Cla018827 Citrullus lanatus Cla018827 I 0.000
Cla019331 Citrullus lanatus Cla019331 I 0.000
Cla019579 Citrullus lanatus Cla019579 I 0.000
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.000
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.000
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.000
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.000
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.000
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.000
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.000
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.000
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.000
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.000
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.000
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.000
gene01338-v1.0-hybrid Fragaria vesca gene01338-v1.0-hybrid I 0.000
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.000
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.000
gene22888-v1.0-hybrid Fragaria vesca gene22888-v1.0-hybrid I 0.000
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.000
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.000
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.000
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.000
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.000
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.000
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.000
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.000
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.000
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.000
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.000
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.000
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.000
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.000
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.000
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.000
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.000
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.000
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.000
GRMZM2G138421 Zea mays GRMZM2G138421 I 0.000
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.000
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.000
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.000
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.000
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.000
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.000
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.000
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.000
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.000
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.000
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.000
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.000
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.000
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.000
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.000
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.000
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.000
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.000
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.000
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.000
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.000
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.000
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.000
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.000
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.000
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.000
MDP0000119458 Malus domestica MDP0000119458 I 0.000
MDP0000142582 Malus domestica MDP0000142582 N 0.000
MDP0000146640 Malus domestica MDP0000146640 I 0.000
MDP0000171877 Malus domestica MDP0000171877 I 0.000
MDP0000193702 Malus domestica MDP0000193702 I 0.000
MDP0000246046 Malus domestica MDP0000246046 I 0.000
MDP0000263766 Malus domestica MDP0000263766 I 0.000
MDP0000778465 Malus domestica MDP0000778465 I 0.000
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.000
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.000
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.000
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.000
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.000
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.000
OBART01G42150 Oryza barthii OBART01G42150 I 0.000
OBART09G15750 Oryza barthii OBART09G15750 I 0.000
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.000
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.000
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.000
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.000
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.000
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.000
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.000
ONIVA09G16860 Oryza nivara ONIVA09G16860 I 0.000
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.000
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.000
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.000
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.000
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.000
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.000
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.000
OS01G0922600 Oryza sativa OS01G0922600 I 0.000
SPL16 Oryza sativa OS08G0531600 I 0.000
SPL18 Oryza sativa OS09G0507100 I 0.000
SPL19 Oryza sativa OS11G0496600 I 0.000
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.000
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.000
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.000
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.000
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.000
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.000
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.000
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.000
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.000
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.000
PK02140.1 Cannabis sativa PK02140.1 I 0.000
PK14243.1 Cannabis sativa PK14243.1 N 0.000
PK17790.1 Cannabis sativa PK17790.1 I 0.000
PK19500.1 Cannabis sativa PK19500.1 I 0.000
Pm016138 Prunus mume Pm016138 I 0.000
Pm024528 Prunus mume Pm024528 I 0.000
Pm025028 Prunus mume Pm025028 I 0.000
Pm030597 Prunus mume Pm030597 I 0.000
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.000
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.000
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.000
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.000
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.000
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.000
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.000
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.000
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.000
PRUPE_ppa007202mg Prunus persica PRUPE_ppa007202mg I 0.000
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.000
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.000
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.000
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.000
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.000
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.000
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.000
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.000
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.000
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.000
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.000
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.000
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.000
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.000
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.000
Si001804m.g Setaria italica Si001804m.g I 0.000
Si013151m.g Setaria italica Si013151m.g I 0.000
Si026656m.g Setaria italica Si026656m.g I 0.000
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.000
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.000
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.000
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.000
TCM_008671 Theobroma cacao TCM_008671 I 0.000
TCM_011483 Theobroma cacao TCM_011483 I 0.000
TCM_014330 Theobroma cacao TCM_014330 I 0.000
TCM_014668 Theobroma cacao TCM_014668 I 0.000
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.000
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.000
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.000
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.000
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N 0.000
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.000
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.000