srfa (Danio rerio)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ENSDARG00000053918 T253620_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		1.000 1.000
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		1.000 1.000
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		1.000 1.000
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		1.000 1.000
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		1.000 1.000
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		1.000 1.000
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		1.000 1.000
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		1.000 1.000
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		1.000 1.000
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		1.000 1.000
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		1.000 1.000
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		1.000 1.000
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		1.000 1.000
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		1.000 1.000
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		1.000 1.000
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		1.000 1.000
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		1.000 1.000
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		1.000 1.000
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		1.000 1.000
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		1.000 1.000
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		1.000 1.000
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		1.000 1.000
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.958 0.958
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.958 0.958
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.896 0.896
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.896 0.896
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.812 0.812
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.812 0.812
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.812 0.812
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.812 0.812
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.812 0.812
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000070514 MADS box 107 154
ENSDARP00000070519 MADS box 129 176
ENSDARP00000137480 MADS box 110 157

Links

Other MADS box family TFs
Other Danio rerio TFs

520 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB04090.1 Alternaria brassicicola AB04090.1 I
AB10568.1 Alternaria brassicicola AB10568.1 I
AOL_s00076g701 Arthrobotrys oligospora AOL_s00076g701 I
ARB_07827 Arthroderma benhamiae ARB_07827 I
AUEXF2481DRAFT_70429 Aureobasidium subglaciale AUEXF2481DRAFT_70429 I
BAUCODRAFT_135551 Baudoinia compniacensis BAUCODRAFT_135551 I
BDDG_07520 Blastomyces dermatitidis BDDG_07520 I
BGHDH14_bgh01021 Blumeria graminis BGHDH14_bgh01021 I
ACLA_039850 Aspergillus clavatus CADACLAG00003794 I
CADAFLAG00002433 Aspergillus flavus CADAFLAG00002433 I
AFUA_3G11970 Aspergillus fumigatus CADAFUAG00005110 I
CADANGAG00002305 Aspergillus niger CADANGAG00002305 I
ANIA_02855 Aspergillus nidulans CADANIAG00010235 I
CADAORAG00001352 Aspergillus oryzae CADAORAG00001352 I
CaO19.7247 Candida albicans CaO19.7247 I
CD36_13310 Candida dubliniensis CD36_13310 I
CIMG_03725 Coccidioides immitis CIMG_03725 I
CLUG_01736 Clavispora lusitaniae CLUG_01736 I
CLUG_01736 Candida lusitaniae CLUG_01736 I
CMQ_7385 Grosmannia clavigera CMQ_7385 I
COCC4DRAFT_68984 Bipolaris maydis COCC4DRAFT_68984 I
COCCADRAFT_5408 Bipolaris zeicola COCCADRAFT_5408 I
COCMIDRAFT_86168 Bipolaris oryzae COCMIDRAFT_86168 I
COCSADRAFT_184320 Bipolaris sorokiniana COCSADRAFT_184320 I
COCVIDRAFT_28133 Bipolaris victoriae COCVIDRAFT_28133 I
CPC735_005640 Coccidioides posadasii CPC735_005640 I
DACRYDRAFT_55334 Dacryopinax sp DACRYDRAFT_55334 I
EPUS_09090 Endocarpon pusillum EPUS_09090 I
estExt_Genewise1Plus.C_11296 Mycosphaerella fijiensis estExt_Genewise1Plus.C_11296 I
estExt_Genewise1Plus.C_11603 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_11603 I
EURHEDRAFT_457463 Aspergillus ruber EURHEDRAFT_457463 I
e_gw1.4.120.1 Mycosphaerella graminicola e_gw1.4.120.1 I
F503_05381 Ophiostoma piceae uamh F503_05381 I
fgenesh1_pg.00866_#_462 Aspergillus carbonarius fgenesh1_pg.00866_#_462 I
gw1.13.295.1 Phycomyces blakesleeanus gw1.13.295.1 I
gww2.13.348.1 Phanerochaete chrysosporium gww2.13.348.1 I
H072_3224 Dactylellina haptotyla H072_3224 I
H101_07360 Trichophyton interdigitale H101_07360 I
H102_08253 Trichophyton rubrum H102_08253 I
H105_08281 Trichophyton soudanense H105_08281 I
HCBG_07376 Histoplasma capsulatum HCBG_07376 I
K437DRAFT_217718 Tilletiaria anomala K437DRAFT_217718 N
KUCA_T00000054001 Kuraishia capsulata KUCA_T00000054001 N
LEMA_P072550.1 Leptosphaeria maculans LEMA_P072550.1 I
M407DRAFT_17900 Tulasnella calospora M407DRAFT_17900 I
M407DRAFT_84761 Tulasnella calospora M407DRAFT_84761 I
M408DRAFT_49948 Serendipita vermifera M408DRAFT_49948 I
M7I_4960 Glarea lozoyensis M7I_4960 I
MBM_08802 Marssonina brunnea MBM_08802 I
MCYG_01012 Arthroderma otae MCYG_01012 I
MCYG_01012 Microsporum canis MCYG_01012 I
MGYG_00974 Microsporum gypseum MGYG_00974 I
MPH_05702 Macrophomina phaseolina MPH_05702 I
Mycgr3G40797 Zymoseptoria tritici Mycgr3G40797 I
OIDMADRAFT_49510 Oidiodendron maius OIDMADRAFT_49510 I
orf19.7247 Candida albicans orf19.7247 D
PAAG_07204 Paracoccidioides sp lutzii PAAG_07204 I
PABG_11557 Paracoccidioides brasiliensis PABG_11557 I
Pc18g00420 Penicillium chrysogenum Pc18g00420 I
PCH_Pc18g00420 Penicillium rubens PCH_Pc18g00420 I
PDE_05163 Penicillium oxalicum PDE_05163 I
PDIP_75300 Penicillium digitatum PDIP_75300 I
PEX1_059590 Penicillium expansum PEX1_059590 I
PHLGIDRAFT_44970 Phlebiopsis gigantea PHLGIDRAFT_44970 I
PITC_013310 Penicillium italicum PITC_013310 I
PMAA_023920 Penicillium marneffei PMAA_023920 I
PMAA_023920 Talaromyces marneffei PMAA_023920 I
POSPLDRAFT_43009 Postia placenta POSPLDRAFT_43009 I
PTRG_00091 Pyrenophora triticirepentis PTRG_00091 I
PTT_14738 Pyrenophora teres PTT_14738 I
PV05_10934 Exophiala xenobiotica PV05_10934 I
PV10_09015 Exophiala mesophila PV10_09015 I
RO3G_01462 Rhizopus oryzae RO3G_01462 I
RO3G_02095 Rhizopus oryzae RO3G_02095 I
SAPIO_CDS0213 Scedosporium apiospermum SAPIO_CDS0213 I
SBOR_2712 Sclerotinia borealis SBOR_2712 I
SETTUDRAFT_167089 Setosphaeria turcica SETTUDRAFT_167089 I
SNOG_11739 Stagonospora nodorum SNOG_11739 I
SNOG_11739 Phaeosphaeria nodorum SNOG_11739 I
TEQG_01042 Trichophyton equinum TEQG_01042 I
TESG_04572 Trichophyton tonsurans TESG_04572 I
TSTA_032350 Talaromyces stipitatus TSTA_032350 I
U727_0043393201 Penicillium solitum U727_0043393201 I
UCRNP2_6201 Neofusicoccum parvum UCRNP2_6201 I
UREG_07541 Uncinocarpus reesii UREG_07541 I
V499_08665 Pseudogymnoascus pannorum V499_08665 I
VHEMI02022 Torrubiella hemipterigena VHEMI02022 I
WALSEDRAFT_15215 Wallemia sebi WALSEDRAFT_15215 N