SRF (Taeniopygia guttata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ENSTGUG00000004738 T253840_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.963 0.963
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.963 0.963
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.963 0.963
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.963 0.963
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.963 0.963
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.963 0.963
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.963 0.963
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.963 0.963
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.963 0.963
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.963 0.963
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.963 0.963
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.963 0.963
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.963 0.963
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.963 0.963
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.963 0.963
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.963 0.963
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.963 0.963
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.963 0.963
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.963 0.963
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.963 0.963
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.963 0.963
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.963 0.963
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.963 0.963
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.926 0.926
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.926 0.926
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.852 0.852
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.815 0.815
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.815 0.815
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.815 0.815
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.815 0.815
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.815 0.815
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000004884 MADS box 1 27

Links

Other MADS box family TFs
Other Taeniopygia guttata TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R005960 Calypte anna Aan_R005960 I
Aan_R013385 Calypte anna Aan_R013385 I
Afo_R003301 Aptenodytes forsteri Afo_R003301 I
Afo_R010233 Aptenodytes forsteri Afo_R010233 I
Alligator_sinensis_CCG011609.1 Alligator sinensis Alligator_sinensis_CCG011609.1 I
Brh_R004866 Buceros rhinoceros Brh_R004866 I
Brh_R005208 Buceros rhinoceros Brh_R005208 I
Cmyd_10015921 Chelonia mydas Cmyd_10015921 I
TP73 Anolis carolinensis ENSACAG00000001622 I
ENSACAG00000002961 Anolis carolinensis ENSACAG00000002961 I
ENSACAG00000022533 Anolis carolinensis ENSACAG00000022533 I
ENSAMEG00000000763 Ailuropoda melanoleuca ENSAMEG00000000763 I
ENSAMEG00000009237 Ailuropoda melanoleuca ENSAMEG00000009237 I
ENSAMXG00000004843 Astyanax mexicanus ENSAMXG00000004843 I
ENSAMXG00000013958 Astyanax mexicanus ENSAMXG00000013958 I
ENSAPLG00000003880 Anas platyrhynchos ENSAPLG00000003880 I
ENSAPLG00000012917 Anas platyrhynchos ENSAPLG00000012917 I
TP73 Bos taurus ENSBTAG00000005812 I
TP63 Bos taurus ENSBTAG00000015460 I
TP63 Canis familiaris ENSCAFG00000013961 I
TP73 Canis familiaris ENSCAFG00000019489 I
TP63 Choloepus hoffmanni ENSCHOG00000010497 I
TP73 Callithrix jacchus ENSCJAG00000002773 I
TP63 Callithrix jacchus ENSCJAG00000014256 I
TP73 Cavia porcellus ENSCPOG00000010908 I
TP63 Cavia porcellus ENSCPOG00000014770 I
ENSCSAG00000000724 Chlorocebus sabaeus ENSCSAG00000000724 I
ENSCSAG00000009062 Chlorocebus sabaeus ENSCSAG00000009062 I
tp73 Danio rerio ENSDARG00000017953 I
tp63 Danio rerio ENSDARG00000044356 I
TP63 Dasypus novemcinctus ENSDNOG00000016582 I
Trp63 Dipodomys ordii ENSDORG00000002061 I
TP73 Equus caballus ENSECAG00000000771 I
TP63 Equus caballus ENSECAG00000018546 I
TP73 Erinaceus europaeus ENSEEUG00000013128 I
ENSFALG00000007393 Ficedula albicollis ENSFALG00000007393 I
ENSFALG00000009625 Ficedula albicollis ENSFALG00000009625 I
TP63 Felis catus ENSFCAG00000000790 I
TP73 Felis catus ENSFCAG00000011627 I
TP63 Homo sapiens ENSG00000073282 D
TP73 Homo sapiens ENSG00000078900 D
tp73 Gasterosteus aculeatus ENSGACG00000006547 I
ENSGACG00000013629 Gasterosteus aculeatus ENSGACG00000013629 I
TP73 Gallus gallus ENSGALG00000001006 I
TP63 Gallus gallus ENSGALG00000007324 I
TP63 Gorilla gorilla ENSGGOG00000005113 I
TP73 Gorilla gorilla ENSGGOG00000015559 I
ENSGMOG00000000413 Gadus morhua ENSGMOG00000000413 I
ENSLACG00000014214 Latimeria chalumnae ENSLACG00000014214 I
ENSLACG00000019068 Latimeria chalumnae ENSLACG00000019068 I
TP73 Loxodonta africana ENSLAFG00000007013 I
TP63 Loxodonta africana ENSLAFG00000031461 I
ENSLOCG00000005148 Lepisosteus oculatus ENSLOCG00000005148 I
ENSLOCG00000005255 Lepisosteus oculatus ENSLOCG00000005255 I
ENSMEUG00000000762 Macropus eugenii ENSMEUG00000000762 I
TP73 Meleagris gallopavo ENSMGAG00000001562 I
TP63 Meleagris gallopavo ENSMGAG00000007535 I
TP63 Microcebus murinus ENSMICG00000005240 I
TP63 Myotis lucifugus ENSMLUG00000015597 I
TP63 Macaca mulatta ENSMMUG00000016466 I
TP73 Macaca mulatta ENSMMUG00000016569 I
TP63 Monodelphis domestica ENSMODG00000015060 I
ENSMPUG00000003438 Mustela putorius furo ENSMPUG00000003438 I
ENSMPUG00000007407 Mustela putorius furo ENSMPUG00000007407 I
Trp63 Mus musculus ENSMUSG00000022510 D
Trp73 Mus musculus ENSMUSG00000029026 D
ENSNLEG00000006723 Nomascus leucogenys ENSNLEG00000006723 I
TP63 Ornithorhynchus anatinus ENSOANG00000013795 I
ENSOARG00000015833 Ovis aries ENSOARG00000015833 I
ENSOARG00000020478 Ovis aries ENSOARG00000020478 I
TP63 Oryctolagus cuniculus ENSOCUG00000016465 I
TP63 Otolemur garnettii ENSOGAG00000003838 I
TP73 Otolemur garnettii ENSOGAG00000006041 I
ENSONIG00000002106 Oreochromis niloticus ENSONIG00000002106 I
ENSONIG00000019325 Oreochromis niloticus ENSONIG00000019325 I
tp73 Oryzias latipes ENSORLG00000004402 I
tp63 Oryzias latipes ENSORLG00000015665 I
ENSP00000264731 Macaca fascicularis ENSP00000264731 I
ENSP00000264731-D1 Bos grunniens ENSP00000264731-D1 I
ENSP00000367545 Macaca fascicularis ENSP00000367545 I
ENSP00000367545-D1 Bos grunniens ENSP00000367545-D1 I
ENSPANG00000006656 Papio anubis ENSPANG00000006656 I
ENSPANG00000010294 Papio anubis ENSPANG00000010294 I
TP73 Procavia capensis ENSPCAG00000000703 I
TP63 Procavia capensis ENSPCAG00000005011 I
ENSPFOG00000000910 Poecilia formosa ENSPFOG00000000910 I
ENSPFOG00000010828 Poecilia formosa ENSPFOG00000010828 I
ENSPMAG00000009535 Petromyzon marinus ENSPMAG00000009535 I
ENSPPYG00000001963 Pongo abelii ENSPPYG00000001963 I
ENSPPYG00000014401 Pongo abelii ENSPPYG00000014401 I
ENSPSIG00000004164 Pelodiscus sinensis ENSPSIG00000004164 I
ENSPSIG00000016009 Pelodiscus sinensis ENSPSIG00000016009 I
TP63 Pan troglodytes ENSPTRG00000015733 I
TP73 Pteropus vampyrus ENSPVAG00000008937 I
TP63 Pteropus vampyrus ENSPVAG00000009056 I
Tp63 Rattus norvegicus ENSRNOG00000001924 I
Tp73 Rattus norvegicus ENSRNOG00000024707 I
TP63 Sorex araneus ENSSARG00000012752 I
ENSSHAG00000005668 Sarcophilus harrisii ENSSHAG00000005668 I
TP63 Sus scrofa ENSSSCG00000025592 I
TP73 Sus scrofa ENSSSCG00000025685 I
ENSSTOG00000013771 Ictidomys tridecemlineatus ENSSTOG00000013771 I
ENSSTOG00000029194 Ictidomys tridecemlineatus ENSSTOG00000029194 I
TP73 Taeniopygia guttata ENSTGUG00000002743 I
TP63 Taeniopygia guttata ENSTGUG00000009377 I
tp73 Tetraodon nigroviridis ENSTNIG00000011978 I
tp63 Tetraodon nigroviridis ENSTNIG00000013774 I
tp63 Takifugu rubripes ENSTRUG00000003420 I
tp73 Takifugu rubripes ENSTRUG00000014931 I
ENSTSYG00000003709 Tarsius syrichta ENSTSYG00000003709 I
TP73 Tursiops truncatus ENSTTRG00000003435 I
TP63 Tursiops truncatus ENSTTRG00000011638 I
ENSXMAG00000016425 Xiphophorus maculatus ENSXMAG00000016425 I
ENSXMAG00000017360 Xiphophorus maculatus ENSXMAG00000017360 I
Gfo_R004420 Geospiza fortis Gfo_R004420 I
Gfo_R009749 Geospiza fortis Gfo_R009749 I
Myotis_brandtii_Tp63_10011644 Myotis brandtii Myotis_brandtii_Tp63_10011644 I
Ogr07265 Ophisaurus gracilis Ogr07265 I
Ogr15303 Ophisaurus gracilis Ogr15303 I
Pvit_07832 Pogona vitticeps Pvit_07832 I
Pvit_15794 Pogona vitticeps Pvit_15794 I
Tal_R007660 Tyto alba Tal_R007660 I
tp63 Xenopus tropicalis XB-GENE-479868 I
tp73 Xenopus tropicalis XB-GENE-482857 I
tp63.L Xenopus laevis XB-GENE-865317 I