fgenesh2_kg.2__2089__AT1G77950.1 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 fgenesh2_kg.2__2089__AT1G77950.1 T254018_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL67
M10907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G77950_01 		0.979 0.979
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__2089__AT1G77950.1 MADS box 10 57

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29908.m005982 Ricinus communis 29908.m005982 I 0.771
30170.m013776 Ricinus communis 30170.m013776 I 0.771
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.812
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.750
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.771
AGL104 Arabidopsis thaliana AT1G22130 I 0.812
AGL67 Arabidopsis thaliana AT1G77950 D 0.979
AGL66 Arabidopsis thaliana AT1G77980 I 0.833
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.771
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.792
Bo6g121610 Brassica oleracea Bo6g121610 I 0.896
Bo6g121640 Brassica oleracea Bo6g121640 I 0.854
Bo7g060150 Brassica oleracea Bo7g060150 I 0.812
Bo8g071330 Brassica oleracea Bo8g071330 I 0.812
Bostr.12659s0064 Boechera stricta Bostr.12659s0064 I 0.771
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.812
Bra012308 Brassica rapa Bra012308 I 0.812
Bra015643 Brassica rapa Bra015643 I 0.854
Bra015645 Brassica rapa Bra015645 I 0.896
Bra016386 Brassica rapa Bra016386 I 0.812
BRADI3G39177 Brachypodium distachyon BRADI3G39177 I 0.812
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.833
Cagra.0096s0039 Capsella grandiflora Cagra.0096s0039 I 0.958
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.812
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.812
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.833
Carubv10021761m.g Capsella rubella Carubv10021761m.g I 0.958
cassava22012.m1 Manihot esculenta cassava22012.m1 I 0.771
cassava25616.m1 Manihot esculenta cassava25616.m1 I 0.750
cassava32041.m1 Manihot esculenta cassava32041.m1 I 0.771
Ca_01572 Cicer arietinum Ca_01572 I 0.729
Ca_24539 Cicer arietinum Ca_24539 I 0.771
Ciclev10001730m.g Citrus clementina Ciclev10001730m.g I 0.729
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.792
Cla014721 Citrullus lanatus Cla014721 I 0.771
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.729
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.708
evm.TU.supercontig_21.133 Carica papaya evm.TU.supercontig_21.133 I 0.729
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.708
F775_03584 Aegilops tauschii F775_03584 I 0.812
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.833
fgenesh2_kg.2__2429__AT1G77950.2 Arabidopsis lyrata fgenesh2_kg.2__2429__AT1G77950.2 I 1.000
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.792
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.708
GLYMA13G02170 Glycine max GLYMA13G02170 I 0.729
GLYMA14G34160 Glycine max GLYMA14G34160 I 0.750
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.771
Gorai.005G100600 Gossypium raimondii Gorai.005G100600 I 0.771
Gorai.007G242000 Gossypium raimondii Gorai.007G242000 I 0.729
Gorai.009G216900 Gossypium raimondii Gorai.009G216900 I 0.771
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.792
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.792
GSMUA_Achr3G04450_001 Musa acuminata GSMUA_Achr3G04450_001 I 0.792
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.792
H311_00382 Anncaliia algerae H311_00382 I 0.741
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.792
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.792
Lus10016810.g Linum usitatissimum Lus10016810.g I 0.750
Lus10018714.g Linum usitatissimum Lus10018714.g I 0.750
Lus10022506.g Linum usitatissimum Lus10022506.g I 0.750
Lus10024823.g Linum usitatissimum Lus10024823.g I 0.708
MDP0000152821 Malus domestica MDP0000152821 I 0.729
MDP0000243965 Malus domestica MDP0000243965 I 0.792
mgf017317m Mimulus guttatus mgf017317m I 0.729
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.708
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.729
OB06G17440 Oryza brachyantha OB06G17440 I 0.771
OB08G26170 Oryza brachyantha OB08G26170 I 0.792
OBART06G07860 Oryza barthii OBART06G07860 I 0.771
OBART08G19110 Oryza barthii OBART08G19110 I 0.792
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.771
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.792
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.792
OMERI06G09450 Oryza meridionalis OMERI06G09450 I 0.750
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.750
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.771
ONIVA08G21050 Oryza nivara ONIVA08G21050 I 0.771
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.771
OPUNC08G17110 Oryza punctata OPUNC08G17110 I 0.771
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.792
orange1.1g046530m.g Citrus sinensis orange1.1g046530m.g I 0.729
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.771
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.792
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.792
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.792
OS06G0223300 Oryza sativa OS06G0223300 I 0.771
OS08G0494100 Oryza sativa OS08G0494100 I 0.792
Pavir.Db01574 Panicum virgatum Pavir.Db01574 I 0.771
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.771
Pavir.J32837 Panicum virgatum Pavir.J32837 I 0.792
Pm005355 Prunus mume Pm005355 I 0.729
Pm019181 Prunus mume Pm019181 I 0.771
POPTR_0002s09290 Populus trichocarpa POPTR_0002s09290 I 0.792
POPTR_0007s05980 Populus trichocarpa POPTR_0007s05980 I 0.771
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.771
PRUPE_ppa020874mg Prunus persica PRUPE_ppa020874mg I 0.750
PRUPE_ppa023054mg Prunus persica PRUPE_ppa023054mg I 0.708
SapurV1A.0010s0340 Salix purpurea SapurV1A.0010s0340 I 0.792
SapurV1A.0293s0130 Salix purpurea SapurV1A.0293s0130 I 0.771
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.792
Si008439m.g Setaria italica Si008439m.g I 0.792
Si013985m.g Setaria italica Si013985m.g I 0.771
Solyc04g078300.2 Solanum lycopersicum Solyc04g078300.2 I 0.708
TCM_001182 Theobroma cacao TCM_001182 I 0.792
TCM_034757 Theobroma cacao TCM_034757 I 0.729
TCM_034970 Theobroma cacao TCM_034970 I 0.792
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.854
Thhalv10019795m.g Eutrema salsugineum Thhalv10019795m.g I 0.958
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.812
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.812
VIT_07s0031g01140 Vitis vinifera VIT_07s0031g01140 I 0.771
VIT_18s0001g04810 Vitis vinifera VIT_18s0001g04810 I 0.708
VIT_18s0001g09540 Vitis vinifera VIT_18s0001g09540 I 0.729