ORGLA03G0315000 (Oryza glaberrima)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ORGLA03G0315000 T255380_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9LEI1_HORVU
M10984_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM7_01 		0.833 0.833
MADS1
M10969_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_02 		0.833 0.833
MADS5
M10970_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_02 		0.833 0.833
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.812 0.812
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.812 0.812
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.812 0.812
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.812 0.812
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.812 0.812
Q9LEH9_HORVU
M10983_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM9_01 		0.812 0.812
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.812 0.812
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.812 0.812
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.812 0.812
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.812 0.812
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.812 0.812
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.812 0.812
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.812 0.812
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.812 0.812
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.812 0.812
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.812 0.812
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.812 0.812
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.812 0.812
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.812 0.812
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.812 0.812
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.792 0.792
AGL3
M02693_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 SELEX
Mathelier et al.(2014)
MA0001.2 		0.792 0.792
AGL3
M10908_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 Transfac
Matys et al.(2006)
P$AGL3_01 		0.792 0.792
AGL3
M10909_2.00 		Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN		 Transfac
Matys et al.(2006)
P$AGL3_02 		0.792 0.792
AGL3
M10910_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL3_03 		0.792 0.792
SEP2
M10916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL4_01 		0.792 0.792
Q9ATF2_PETHY
M11014_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP5_01 		0.792 0.792
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.792 0.792
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.792 0.792
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.792 0.792
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.771 0.771
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.771 0.771
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.771 0.771
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.771 0.771
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.771 0.771
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.771 0.771
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.771 0.771
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.750 0.750
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.750 0.750
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.750 0.750
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.750 0.750
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.750 0.750
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.750 0.750
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.750 0.750
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.750 0.750
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.750 0.750
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.750 0.750
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.750 0.750
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.750 0.750
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.750 0.750
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.750 0.750
AGL13
M06989_2.00 		Arabidopsis thaliana
WTWCYHAAAAWRGWAADW
WHTTWCYWTTTTDRGWAW		 Dap-seq
OMalley et al.(2016)
AGL13_col_b 		0.729 0.729
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.729 0.729
AP1
M08144_2.00 		Arabidopsis thaliana
MYAAAAAWRGAAA
TTTCYWTTTTTRK		 ChIP-seq
Mathelier et al.(2014)
MA0940.1 		0.729 0.729
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.729 0.729
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.729 0.729
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.729 0.729
MADS18
M10973_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS18_01 		0.729 0.729
AP1
M10905_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSA_Q2 		0.729 0.729
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.708 0.708
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.708 0.708
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
Q9LEI3_HORVU
M10985_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM3_01 		0.708 0.708
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.708 0.708
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.708 0.708
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.708 0.708
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.708 0.708
MADS15
M10972_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_01 		0.708 0.708
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.708 0.708
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.708 0.708
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA03G0315000.1 MADS box 10 57

Links

Other MADS box family TFs
Other Oryza glaberrima TFs

1199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC050 Arabidopsis thaliana AT3G10480 D
ANAC052 Arabidopsis thaliana AT3G10490 I
BGIOSGA009316 Oryza indica BGIOSGA009316 I
BGIOSGA026481 Oryza indica BGIOSGA026481 I
Bo1g143840 Brassica oleracea Bo1g143840 I
Bo1g143850 Brassica oleracea Bo1g143850 I
Bo3g062700 Brassica oleracea Bo3g062700 I
Bo3g062710 Brassica oleracea Bo3g062710 I
Bo5g137360 Brassica oleracea Bo5g137360 I
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I
Bra001365 Brassica rapa Bra001365 I
Bra001366 Brassica rapa Bra001366 I
Bra029844 Brassica rapa Bra029844 I
Bra034119 Brassica rapa Bra034119 I
BRADI3G12470 Brachypodium distachyon BRADI3G12470 I
BRADI3G56080 Brachypodium distachyon BRADI3G56080 I
Cagra.0834s0028 Capsella grandiflora Cagra.0834s0028 I
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I
Cagra.9217s0020 Capsella grandiflora Cagra.9217s0020 I
Carubv10003768m.g Capsella rubella Carubv10003768m.g I
Carubv10013564m.g Capsella rubella Carubv10013564m.g I
Carubv10013694m.g Capsella rubella Carubv10013694m.g I
cassava22912.valid.m1 Manihot esculenta cassava22912.valid.m1 I
Ca_08371 Cicer arietinum Ca_08371 I
chr5.CM0909.750.nc Lotus japonicus chr5.CM0909.750.nc I
Ciclev10031606m.g Citrus clementina Ciclev10031606m.g I
Cla020838 Citrullus lanatus Cla020838 I
Cucsa.308760 Cucumis sativus Cucsa.308760 I
F775_27564 Aegilops tauschii F775_27564 I
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I
GLYMA10G34130 Glycine max GLYMA10G34130 I
GLYMA20G33430 Glycine max GLYMA20G33430 I
Gorai.009G309300 Gossypium raimondii Gorai.009G309300 I
Gorai.011G234200 Gossypium raimondii Gorai.011G234200 I
Gorai.012G007000 Gossypium raimondii Gorai.012G007000 I
GRMZM2G113950 Zea mays GRMZM2G113950 I
LPERR08G20450 Leersia perrieri LPERR08G20450 I
Lus10037939.g Linum usitatissimum Lus10037939.g I
Lus10038670.g Linum usitatissimum Lus10038670.g I
MDP0000258167 Malus domestica MDP0000258167 I
MDP0000437676 Malus domestica MDP0000437676 I
mgf000623m Mimulus guttatus mgf000623m I
mgf004743m Mimulus guttatus mgf004743m I
MTR_1g090720 Medicago truncatula MTR_1g090720 I
OB02G44540 Oryza brachyantha OB02G44540 I
OB08G30590 Oryza brachyantha OB08G30590 I
OBART02G37700 Oryza barthii OBART02G37700 I
OBART08G23760 Oryza barthii OBART08G23760 I
OGLUM02G38880 Oryza glumaepatula OGLUM02G38880 I
OGLUM08G25240 Oryza glumaepatula OGLUM08G25240 I
OLONG_023179 Oryza longistaminata OLONG_023179 I
OMERI08G18580 Oryza meridionalis OMERI08G18580 I
ONIVA02G40500 Oryza nivara ONIVA02G40500 I
ONIVA08G26810 Oryza nivara ONIVA08G26810 I
OPUNC02G34910 Oryza punctata OPUNC02G34910 I
OPUNC08G21700 Oryza punctata OPUNC08G21700 I
orange1.1g014130m.g Citrus sinensis orange1.1g014130m.g I
ORGLA02G0329400 Oryza glaberrima ORGLA02G0329400 I
ORGLA08G0191600 Oryza glaberrima ORGLA08G0191600 I
ORUFI02G39260 Oryza rufipogon ORUFI02G39260 I
ORUFI08G26250 Oryza rufipogon ORUFI08G26250 I
OS02G0822400 Oryza sativa OS02G0822400 I
OS08G0562200 Oryza sativa OS08G0562200 I
Pavir.Aa00085 Panicum virgatum Pavir.Aa00085 I
Pavir.Ab03009 Panicum virgatum Pavir.Ab03009 I
Pavir.Fa00048 Panicum virgatum Pavir.Fa00048 I
Pavir.Fb02407 Panicum virgatum Pavir.Fb02407 I
PK06477.1 Cannabis sativa PK06477.1 I
Pm017547 Prunus mume Pm017547 I
POPTR_0010s23630 Populus trichocarpa POPTR_0010s23630 I
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I
Sb04g037720 Sorghum bicolor Sb04g037720 I
Sb07g023900 Sorghum bicolor Sb07g023900 I
Si013361m.g Setaria italica Si013361m.g I
Si016620m.g Setaria italica Si016620m.g I
TCM_043357 Theobroma cacao TCM_043357 I
Thhalv10020717m.g Eutrema salsugineum Thhalv10020717m.g I
Thhalv10020745m.g Eutrema salsugineum Thhalv10020745m.g I
Traes_6AL_8BA1FF8B2 Triticum aestivum Traes_6AL_8BA1FF8B2 I
Traes_7BL_FB5FAC1E8 Triticum aestivum Traes_7BL_FB5FAC1E8 I
Traes_7DS_9FBF54244 Triticum aestivum Traes_7DS_9FBF54244 I
TRIUR3_33524 Triticum urartu TRIUR3_33524 I
VIT_13s0019g05230 Vitis vinifera VIT_13s0019g05230 I
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I