POPTR_0012s10190 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0012s10190 T255859_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.875 0.875
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.854 0.854
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.854 0.854
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.833 0.833
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.812 0.812
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.812 0.812
SEP2
M10916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL4_01 		0.792 0.792
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.792 0.792
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.771 0.771
Q9LEH9_HORVU
M10983_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM9_01 		0.771 0.771
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.771 0.771
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.771 0.771
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.771 0.771
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.771 0.771
AGL13
M06989_2.00 		Arabidopsis thaliana
WTWCYHAAAAWRGWAADW
WHTTWCYWTTTTDRGWAW		 Dap-seq
OMalley et al.(2016)
AGL13_col_b 		0.750 0.750
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.750 0.750
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.750 0.750
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.750 0.750
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.750 0.750
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.750 0.750
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.750 0.750
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.750 0.750
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.750 0.750
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.750 0.750
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.750 0.750
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.750 0.750
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.750 0.750
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.750 0.750
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.750 0.750
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.750 0.750
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.750 0.750
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.750 0.750
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.750 0.750
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.750 0.750
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.750 0.750
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.750 0.750
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.750 0.750
MADS15
M10972_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_01 		0.750 0.750
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.750 0.750
MADS18
M10973_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS18_01 		0.750 0.750
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.750 0.750
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.750 0.750
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.750 0.750
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.750 0.750
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.750 0.750
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.750 0.750
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.750 0.750
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.750 0.750
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.750 0.750
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.750 0.750
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.750 0.750
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.750 0.750
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.729 0.729
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.729 0.729
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.729 0.729
Q9LEI3_HORVU
M10985_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM3_01 		0.729 0.729
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.729 0.729
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.729 0.729
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.729 0.729
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.729 0.729
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.729 0.729
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
AGL3
M02693_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 SELEX
Mathelier et al.(2014)
MA0001.2 		0.708 0.708
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.708 0.708
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.708 0.708
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
AGL3
M10908_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 Transfac
Matys et al.(2006)
P$AGL3_01 		0.708 0.708
AGL3
M10909_2.00 		Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN		 Transfac
Matys et al.(2006)
P$AGL3_02 		0.708 0.708
AGL3
M10910_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL3_03 		0.708 0.708
Q9LEI1_HORVU
M10984_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM7_01 		0.708 0.708
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.708 0.708
Q9ATF2_PETHY
M11014_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP5_01 		0.708 0.708
Q43616_PETHY
M11004_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP7_01 		0.708 0.708
MADS1
M10969_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_02 		0.708 0.708
Q8GT99_TOBAC
M11006_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_02 		0.708 0.708
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.708 0.708
MADS5
M10970_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_02 		0.708 0.708
Q9SBQ1_PETHY
M11017_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PFG_01 		0.708 0.708
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s10190.1 MADS box 10 57

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

1568 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_pg.C_90194 Phytophthora capsici estExt_fgenesh1_pg.C_90194 N
F443_16826 Phytophthora parasitica F443_16826 N
fgenesh_scip_prom.28083.3493 Phytophthora lateralis fgenesh_scip_prom.28083.3493 N
HpaG808627 Hyaloperonospora arabidopsidis HpaG808627 N
maker-par_contig_2454-snap-gene-0.3 Pythium arrhenomanes maker-par_contig_2454-snap-gene-0.3 N
maker-par_contig_7729-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_7729-fgenesh-gene-0.0 N
Phyra84539 Phytophthora ramorum Phyra84539 N
Physo142772 Phytophthora sojae Physo142772 N
PITG_17559 Phytophthora infestans PITG_17559 N