Bostr.0568s0285 (Boechera stricta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Bostr.0568s0285 T257556_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.872 0.872
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.830 0.830
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.830 0.830
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.830 0.830
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.0568s0285.1.p MADS box 10 56

Links

Other MADS box family TFs
Other Boechera stricta TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R005479 Calypte anna Aan_R005479 N 0.000
ACEP25970 Atta cephalotes ACEP25970 N 0.000
ACOM023832 Anopheles coluzzii ACOM023832 N 0.000
ACRE_008210 Acremonium chrysogenum ACRE_008210 N 0.000
ANCCAN_16550 Ancylostoma caninum ANCCAN_16550 N 0.000
ASIM_0001638701 Anisakis simplex ASIM_0001638701 N 0.000
Bo4g012540 Brassica oleracea Bo4g012540 N 0.000
BOTBODRAFT_174219 Botryobasidium botryosum BOTBODRAFT_174219 N 0.000
BOTBODRAFT_182015 Botryobasidium botryosum BOTBODRAFT_182015 N 0.000
BOTBODRAFT_44712 Botryobasidium botryosum BOTBODRAFT_44712 N 0.000
Bra015737 Brassica rapa Bra015737 N 0.000
Cflo_11029--XP_001120115.1_APIME Camponotus floridanus Cflo_11029--XP_001120115.1_APIME N 0.000
ENSCJAG00000034027 Callithrix jacchus ENSCJAG00000034027 N 0.000
ENSCSAVG00000005880 Ciona savignyi ENSCSAVG00000005880 N 0.000
ARID5A Microcebus murinus ENSMICG00000001964 I 0.000
ARID5A Sorex araneus ENSSARG00000003004 I 0.000
ARID5B Tursiops truncatus ENSTTRG00000009968 N 0.000
evm.TU.supercontig_70.18 Carica papaya evm.TU.supercontig_70.18 N 0.000
e_gw1.8.356.1 Monosiga brevicollis e_gw1.8.356.1 N 0.000
F775_22367 Aegilops tauschii F775_22367 N 0.000
GL12242 Drosophila persimilis FBgn0149849 N 0.000
GD20218 Drosophila simulans FBgn0191696 N 0.000
GK21672 Drosophila willistoni FBgn0223657 N 0.000
GK25519 Drosophila willistoni FBgn0227478 N 0.000
gene11760-v1.0-hybrid Fragaria vesca gene11760-v1.0-hybrid N 0.000
Genemark1.2983_g Coccomyxa subellipsoidea C169 Genemark1.2983_g N 0.000
HCOI00647600 Haemonchus contortus HCOI00647600 N 0.000
HHAL003716-PA Halyomorpha halys HHAL003716-PA N 0.000
HPBE_0000220801 Heligmosomoides bakeri HPBE_0000220801 N 0.000
Hsal_11763--XP_001120115.1_APIME Harpegnathos saltator Hsal_11763--XP_001120115.1_APIME N 0.000
maker-nMf.1.1.scaf01260-augustus-gene-0.7 Meloidogyne floridensis maker-nMf.1.1.scaf01260-augustus-gene-0.7 N 0.000
MCINX010724 Melitaea cinxia MCINX010724 N 0.000
MESCA003685 Megaselia scalaris MESCA003685 N 0.000
MLOC_7381 Hordeum vulgare MLOC_7381 N 0.000
Myotis_brandtii_KDM5D_10002268 Myotis brandtii Myotis_brandtii_KDM5D_10002268 N 0.000
OESDEN_17751 Oesophagostomum dentatum OESDEN_17751 N 0.000
OFLC_0000209301 Onchocerca flexuosa OFLC_0000209301 N 0.000
orange1.1g009744m.g Citrus sinensis orange1.1g009744m.g I 0.000
ORGLA07G0233500 Oryza glaberrima ORGLA07G0233500 N 0.000
OS06G0622300 Oryza sativa OS06G0622300 I 0.000
Pavir.Da00612 Panicum virgatum Pavir.Da00612 N 0.000
Pavir.J25952 Panicum virgatum Pavir.J25952 N 0.000
PDK_20s1315202g001 Phoenix dactylifera PDK_20s1315202g001 N 0.000
PGSC0003DMG400047019 Solanum tuberosum PGSC0003DMG400047019 N 0.000
PHACADRAFT_251691 Phanerochaete carnosa PHACADRAFT_251691 N 0.000
PHUM027610 Pediculus humanus PHUM027610 N 0.000
PYU1_G003210 Pythium ultimum PYU1_G003210 N 0.000
SBAD_0000429301 Soboliphyme baturini SBAD_0000429301 N 0.000
Sjc_0111140 Schistosoma japonicum Sjc_0111140 N 0.000
SMTD_0000131801 Schistosoma mattheei SMTD_0000131801 N 0.000
SMTD_0001549501 Schistosoma mattheei SMTD_0001549501 N 0.000
Solyc04g025930.1 Solanum lycopersicum Solyc04g025930.1 N 0.000
SPER_0000246801 Spirometra erinaceieuropaei SPER_0000246801 N 0.000
SPER_0003392901 Spirometra erinaceieuropaei SPER_0003392901 N 0.000
SPER_0003827801 Spirometra erinaceieuropaei SPER_0003827801 N 0.000
SPU_003500 Strongylocentrotus purpuratus SPU_003500 N 0.000
SROB_0001561301 Schistosoma rodhaini SROB_0001561301 N 0.000
SVUK_0000804601 Strongylus vulgaris SVUK_0000804601 N 0.000
TRE_0000846701 Trichobilharzia regenti TRE_0000846701 N 0.000
TRIUR3_29596 Triticum urartu TRIUR3_29596 N 0.000
YQE_11989 Dendroctonus ponderosae YQE_11989 N 0.000