LjSGA_102554.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_102554.1 T259399_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_102554.1 MADS box 10 54

Links

Other MADS box family TFs
Other Lotus japonicus TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g083280 Brassica oleracea Bo3g083280 N
Bostr.19424s0179 Boechera stricta Bostr.19424s0179 N
Bra001951 Brassica rapa Bra001951 N
Ciclev10008866m.g Citrus clementina Ciclev10008866m.g N
evm.TU.supercontig_23.117 Carica papaya evm.TU.supercontig_23.117 N
gene02091-v1.0-hybrid Fragaria vesca gene02091-v1.0-hybrid N
orange1.1g019823m.g Citrus sinensis orange1.1g019823m.g N
Pm027397 Prunus mume Pm027397 N
scaffold_302996.1 Arabidopsis lyrata scaffold_302996.1 N
TCM_037914 Theobroma cacao TCM_037914 N
Thhalv10002883m.g Eutrema salsugineum Thhalv10002883m.g N