LjSGA_104570.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_104570.1 T259401_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.828 0.828
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_104570.1 MADS box 21 53

Links

Other MADS box family TFs
Other Lotus japonicus TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R004859 Calypte anna Aan_R004859 I
ACEP24088 Atta cephalotes ACEP24088 I
ACYPI009244 Acyrthosiphon pisum ACYPI009244 I
Alligator_sinensis_CCG007905.1 Alligator sinensis Alligator_sinensis_CCG007905.1 I
Cflo_05798--XP_001122645.1_APIME Camponotus floridanus Cflo_05798--XP_001122645.1_APIME I
Cmyd_10016492 Chelonia mydas Cmyd_10016492 I
ENSAMEG00000014235 Ailuropoda melanoleuca ENSAMEG00000014235 I
HAND2 Bos taurus ENSBTAG00000044123 I
HAND2 Canis familiaris ENSCAFG00000007858 I
HAND2 Callithrix jacchus ENSCJAG00000005144 I
ENSCPOG00000001740 Cavia porcellus ENSCPOG00000001740 I
ENSCSAG00000003094 Chlorocebus sabaeus ENSCSAG00000003094 I
hand2 Danio rerio ENSDARG00000008305 I
HAND2 Dasypus novemcinctus ENSDNOG00000035702 I
Hand2 Dipodomys ordii ENSDORG00000007304 I
HAND2 Equus caballus ENSECAG00000009657 I
ENSFALG00000011490 Ficedula albicollis ENSFALG00000011490 I
HAND2 Felis catus ENSFCAG00000031585 I
HAND2 Homo sapiens ENSG00000164107 D
hand2 Gasterosteus aculeatus ENSGACG00000016418 I
HAND2 Gorilla gorilla ENSGGOG00000006147 I
ENSGMOG00000018978 Gadus morhua ENSGMOG00000018978 I
ENSLACG00000004329 Latimeria chalumnae ENSLACG00000004329 I
HAND2 Loxodonta africana ENSLAFG00000029843 I
ENSLOCG00000013581 Lepisosteus oculatus ENSLOCG00000013581 I
ENSMEUG00000010715 Macropus eugenii ENSMEUG00000010715 I
HAND2 Microcebus murinus ENSMICG00000009054 I
HAND2 Myotis lucifugus ENSMLUG00000002599 I
ENSMMUG00000018749 Macaca mulatta ENSMMUG00000018749 I
HAND2 Monodelphis domestica ENSMODG00000003548 I
ENSMPUG00000001909 Mustela putorius furo ENSMPUG00000001909 I
Hand2 Mus musculus ENSMUSG00000038193 I
ENSNLEG00000006670 Nomascus leucogenys ENSNLEG00000006670 I
ENSOARG00000015352 Ovis aries ENSOARG00000015352 I
ENSOCUG00000016256 Oryctolagus cuniculus ENSOCUG00000016256 I
HAND2 Otolemur garnettii ENSOGAG00000027928 I
ENSONIG00000016059 Oreochromis niloticus ENSONIG00000016059 I
HAND2 Ochotona princeps ENSOPRG00000010154 I
hand2 Oryzias latipes ENSORLG00000010967 I
ENSP00000352565-D1 Bos grunniens ENSP00000352565-D1 I
ENSPANG00000023378 Papio anubis ENSPANG00000023378 I
ENSPFOG00000009546 Poecilia formosa ENSPFOG00000009546 I
ENSPPYG00000015208 Pongo abelii ENSPPYG00000015208 I
HAND2 Pan troglodytes ENSPTRG00000016601 I
ENSSHAG00000011188 Sarcophilus harrisii ENSSHAG00000011188 I
ENSSSCG00000009703 Sus scrofa ENSSSCG00000009703 I
ENSSTOG00000023020 Ictidomys tridecemlineatus ENSSTOG00000023020 I
HAND2 Tupaia belangeri ENSTBEG00000007591 I
HAND2 Taeniopygia guttata ENSTGUG00000006281 I
hand2 Tetraodon nigroviridis ENSTNIG00000005584 I
HAND2 Tursiops truncatus ENSTTRG00000001365 I
HAND2 Vicugna pacos ENSVPAG00000006724 I
ENSXMAG00000015868 Xiphophorus maculatus ENSXMAG00000015868 I
estExt_fgenesh2_pm.C_20027 Branchiostoma floridae estExt_fgenesh2_pm.C_20027 I
e_gw.829.7.1 Branchiostoma floridae e_gw.829.7.1 I
GB46056 Apis mellifera GB46056 I
Gfo_R010505 Geospiza fortis Gfo_R010505 I
HHAL010291-PA Halyomorpha halys HHAL010291-PA I
Hsal_12649--XP_001122645.1_APIME Harpegnathos saltator Hsal_12649--XP_001122645.1_APIME I
ISCW009436 Ixodes scapularis ISCW009436 I
L798_02599 Zootermopsis nevadensis L798_02599 I
NV12516 Nasonia vitripennis NV12516 I
Ogr14661 Ophisaurus gracilis Ogr14661 I
PHUM088400 Pediculus humanus PHUM088400 I
RPRC005573 Rhodnius prolixus RPRC005573 I
SINV12583 Solenopsis invicta SINV12583 I
hand2 Xenopus tropicalis XB-GENE-481426 I
hand2.S Xenopus laevis XB-GENE-6252408 I