Pavir.Ba01676 (Panicum virgatum)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Pavir.Ba01676 T261588_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba01676.1.p MBD 139 220
Pavir.Ba01676.2.p MBD 139 212

Links

Other MBD family TFs
Other Panicum virgatum TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29843.m000288 Ricinus communis 29843.m000288 N 0.718
BGIOSGA029516 Oryza indica BGIOSGA029516 N 0.917
BRADI1G34320 Brachypodium distachyon BRADI1G34320 N 0.708
BRADI4G34050 Brachypodium distachyon BRADI4G34050 N 0.750
cassava11725.valid.m1 Manihot esculenta cassava11725.valid.m1 N 0.708
F775_07408 Aegilops tauschii F775_07408 N 0.875
GRMZM2G025095 Zea mays GRMZM2G025095 N 0.986
GRMZM2G168269 Zea mays GRMZM2G168269 N 0.972
GSMUA_Achr3G05490_001 Musa acuminata GSMUA_Achr3G05490_001 N 0.722
GSMUA_Achr9G14080_001 Musa acuminata GSMUA_Achr9G14080_001 N 0.736
LPERR09G11190 Leersia perrieri LPERR09G11190 N 0.903
MLOC_66533 Hordeum vulgare MLOC_66533 N 0.944
OB09G21610 Oryza brachyantha OB09G21610 N 0.903
OBART09G15030 Oryza barthii OBART09G15030 N 0.878
OGLUM09G15680 Oryza glumaepatula OGLUM09G15680 N 0.917
OLONG_025649 Oryza longistaminata OLONG_025649 N 0.917
OMERI07G04230 Oryza meridionalis OMERI07G04230 N 0.917
ONIVA09G15650 Oryza nivara ONIVA09G15650 N 0.917
OPUNC09G13490 Oryza punctata OPUNC09G13490 N 0.917
ORGLA09G0115900 Oryza glaberrima ORGLA09G0115900 N 0.878
ORUFI09G16230 Oryza rufipogon ORUFI09G16230 N 0.917
OS09G0494300 Oryza sativa OS09G0494300 N 0.917
Pavir.J30425 Panicum virgatum Pavir.J30425 N 0.986
PGSC0003DMG400013699 Solanum tuberosum PGSC0003DMG400013699 N 0.708
Sb02g028780 Sorghum bicolor Sb02g028780 N 1.000
Si030613m.g Setaria italica Si030613m.g N 0.986
Solyc05g047450.1 Solanum lycopersicum Solyc05g047450.1 N 0.708
Traes_5BL_445FD57BE Triticum aestivum Traes_5BL_445FD57BE N 0.944
Traes_5DL_F17F78F73 Triticum aestivum Traes_5DL_F17F78F73 N 0.944
TRIUR3_24492 Triticum urartu TRIUR3_24492 N 0.863