Bra009134 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra009134 T267810_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05790
M07119_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g05790_col_a 		0.842 0.957
AT3G11280
M01075_2.00 		Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN		 PBM
Sullivan et al.(2014)
pTH7245 		0.755 0.904
AT3G11280
M07074_2.00 		Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH		 Dap-seq
OMalley et al.(2016)
At3g11280_col_a 		0.755 0.904
AT3G11280
M07075_2.00 		Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN		 Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a 		0.755 0.904
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.662 0.755
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.662 0.755
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra009134.1-P Myb 128 175

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29610.m000410 Ricinus communis 29610.m000410 I 0.672
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.755
AT5G05790 Arabidopsis thaliana AT5G05790 D 0.842
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.662
Bo1g141120 Brassica oleracea Bo1g141120 I 0.738
Bo3g018460 Brassica oleracea Bo3g018460 I 0.662
Bo5g136680 Brassica oleracea Bo5g136680 I 0.744
Bo9g135730 Brassica oleracea Bo9g135730 I 0.682
Bo9g176900 Brassica oleracea Bo9g176900 I 0.893
Bostr.13129s0394 Boechera stricta Bostr.13129s0394 I 0.842
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.755
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.662
Bra002610 Brassica rapa Bra002610 I 0.662
Bra006741 Brassica rapa Bra006741 I 0.662
Bra034173 Brassica rapa Bra034173 I 0.755
Bra034853 Brassica rapa Bra034853 I 0.755
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.662
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.755
Cagra.5131s0007 Capsella grandiflora Cagra.5131s0007 I 0.842
Carubv10001695m.g Capsella rubella Carubv10001695m.g I 0.842
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.755
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.662
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.696
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.672
Ca_12513 Cicer arietinum Ca_12513 I 0.719
Cla004397 Citrullus lanatus Cla004397 I 0.662
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.674
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.701
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I 0.666
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.755
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.662
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.713
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.704
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.713
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.704
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.712
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.760
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.733
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.714
mgf010347m Mimulus guttatus mgf010347m I 0.677
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.692
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.675
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.675
PK15104.1 Cannabis sativa PK15104.1 I 0.666
Pm018878 Prunus mume Pm018878 I 0.669
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.713
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.683
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.669
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.683
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.702
scaffold_600551.1 Arabidopsis lyrata scaffold_600551.1 I 0.842
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.682
TCM_042604 Theobroma cacao TCM_042604 I 0.800
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.662
Thhalv10014370m.g Eutrema salsugineum Thhalv10014370m.g I 0.826
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.755
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.671