CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra013633 *(Brassica rapa)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	Bra013633	T267863_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB43 M07127_2.00	Arabidopsis thaliana	NYYYACCWAMYWH	DWRKTWGGTRRRN	Dap-seq OMalley et al.(2016) MYB43_col_a	0.778	0.871
PK21166.1 M01281_2.00	Cannabis sativa	HACCWAMY	RKTWGGTD	PBM Lambert et al.(2019) pTH11255	0.767	0.892
MYB99 M07151_2.00	Arabidopsis thaliana	NYYYACCWAMYHH	DDRKTWGGTRRRN	Dap-seq OMalley et al.(2016) MYB99_col_a	0.701	0.753
MYB99 M07152_2.00	Arabidopsis thaliana	YHYACCTAMYH	DRKTAGGTRDR	Dap-seq OMalley et al.(2016) MYB99_colamp_a	0.701	0.753
MYB61 M07002_2.00	Arabidopsis thaliana	HNYAMCHACCDNHNH	DNDNHGGTDGKTRND	Dap-seq OMalley et al.(2016) MYB61_col_a	0.667	0.667
MYB61 M07003_2.00	Arabidopsis thaliana	NHNYACCWAMCDH	DHGKTWGGTRNDN	Dap-seq OMalley et al.(2016) MYB61_colamp_a	0.667	0.667
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra013633.1-P	Myb	14	61	KGPWTAEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNYL
Bra013633.1-P	Myb	67	112	RGLLSHDEEQLVIDLHAHLGNKWSKIASRLPGRTDNEIKNHWNTRI

Links
Other Myb/SANT family TFs
Other *Brassica rapa* TFs