POPTR_0003s08600 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0003s08600 T278239_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
APRR2
M02300_2.00 		Arabidopsis thaliana
NNRNWATCNN
NNGATWNYNN		 PBM
Weirauch et al.(2014)
pTH7102 		0.788 0.894
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s08600.1 Myb 311 361
POPTR_0003s08600.2 Myb 290 340

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30054.m000786 Ricinus communis 30054.m000786 I 0.770
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.738
APRR2 Arabidopsis thaliana AT4G18020 D 0.788
Bo1g019180 Brassica oleracea Bo1g019180 I 0.754
Bo7g105690 Brassica oleracea Bo7g105690 I 0.754
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I 0.754
Bra012623 Brassica rapa Bra012623 I 0.754
Bra013277 Brassica rapa Bra013277 I 0.754
Bra013278 Brassica rapa Bra013278 I 0.754
Bra013279 Brassica rapa Bra013279 I 0.754
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I 0.699
Carubv10004540m.g Capsella rubella Carubv10004540m.g I 0.699
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I 0.743
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I 0.680
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I 0.680
Ca_02285 Cicer arietinum Ca_02285 I 0.706
Ca_12825 Cicer arietinum Ca_12825 I 0.698
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I 0.688
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I 0.698
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.795
Cla008926 Citrullus lanatus Cla008926 I 0.762
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.762
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.787
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I 0.855
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.788
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.795
GLYMA01G40900 Glycine max GLYMA01G40900 I 0.688
GLYMA11G04441 Glycine max GLYMA11G04441 I 0.688
GLYMA17G16360 Glycine max GLYMA17G16360 I 0.717
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I 0.666
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I 0.672
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I 0.706
GSMUA_Achr2G18200_001 Musa acuminata GSMUA_Achr2G18200_001 I 0.671
Lus10003013.g Linum usitatissimum Lus10003013.g I 0.682
Lus10011044.g Linum usitatissimum Lus10011044.g I 0.743
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.722
MDP0000237396 Malus domestica MDP0000237396 I 0.781
MDP0000248863 Malus domestica MDP0000248863 I 0.731
MTR_4g098870 Medicago truncatula MTR_4g098870 I 0.691
MTR_5g014040 Medicago truncatula MTR_5g014040 I 0.672
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.795
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.728
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I 0.698
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I 0.738
PK19826.1 Cannabis sativa PK19826.1 I 0.795
Pm014733 Prunus mume Pm014733 I 0.795
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I 0.819
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.795
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I 0.837
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I 0.866
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I 0.699
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I 0.738
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I 0.698
TCM_015780 Theobroma cacao TCM_015780 I 0.746
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I 0.754
APRR2 Vitis vinifera VIT_02s0012g00570 I 0.742