TCM_012262 (Theobroma cacao)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 TCM_012262 T280484_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G49010
M01269_2.00 		Arabidopsis thaliana
NNYWATCNN
NNGATWRNN		 PBM
Lambert et al.(2019)
pTH11535 		0.764 0.848
AT1G49010
M07022_2.00 		Arabidopsis thaliana
NHHWWYCTTATCYWH
DWRGATAAGRWWDDN		 Dap-seq
OMalley et al.(2016)
At1g49010_col_a 		0.764 0.848
AT1G49010
M07023_2.00 		Arabidopsis thaliana
WWYCTTATCYWHWHH
DDWDWRGATAAGRWW		 Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a 		0.764 0.848
PK19621.1
M01280_2.00 		Cannabis sativa
NNTTATCYN
NRGATAANN		 PBM
Lambert et al.(2019)
pTH10140 		0.726 0.837
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY20939 Myb 135 180

Links

Other Myb/SANT family TFs
Other Theobroma cacao TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORG2 Arabidopsis thaliana AT3G56970 N
Bo01495s010 Brassica oleracea Bo01495s010 N
Bo4g112570 Brassica oleracea Bo4g112570 N
Bo4g112590 Brassica oleracea Bo4g112590 N
Bo6g072500 Brassica oleracea Bo6g072500 N
Bo6g072510 Brassica oleracea Bo6g072510 N
Bostr.20505s0055 Boechera stricta Bostr.20505s0055 N
Bostr.20505s0056 Boechera stricta Bostr.20505s0056 N
Bra003260 Brassica rapa Bra003260 N
Bra014654 Brassica rapa Bra014654 N
Bra014657 Brassica rapa Bra014657 N
Bra014658 Brassica rapa Bra014658 N
Cagra.0578s0028 Capsella grandiflora Cagra.0578s0028 N
Carubv10017770m.g Capsella rubella Carubv10017770m.g N
Carubv10019130m.g Capsella rubella Carubv10019130m.g N
BHLH039 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001751 N
gene27422-v1.0-hybrid Fragaria vesca gene27422-v1.0-hybrid N
POPTR_0006s03560 Populus trichocarpa POPTR_0006s03560 N
POPTR_0006s03590 Populus trichocarpa POPTR_0006s03590 N
SapurV1A.0196s0420 Salix purpurea SapurV1A.0196s0420 N
Solyc10g079660.1 Solanum lycopersicum Solyc10g079660.1 N
Thhalv10006189m.g Eutrema salsugineum Thhalv10006189m.g N
Thhalv10006191m.g Eutrema salsugineum Thhalv10006191m.g N
Thhalv10006491m.g Eutrema salsugineum Thhalv10006491m.g N