CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla009230
(
Citrullus lanatus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cla009230
T283197_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SRM1
M02307_2.00
Arabidopsis thaliana
NNHNATCNN
NNGATNDNN
PBM
Weirauch et al.(2014)
pTH7080
0.713
0.826
SRM1
M07121_2.00
Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a
0.713
0.826
SRM1
M07122_2.00
Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_col_b
0.713
0.826
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla009230
Myb
9
58
SSLWSLEQDKAFENALASHPEDDSDRWEKIAFDVPGKTIEEIKHHYELLV
Cla009230
Myb
122
167
AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Citrullus lanatus
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30131.m007263
Ricinus communis
30131.m007263
I
0.808
AMTR_s00106p00065610
Amborella trichopoda
AMTR_s00106p00065610
N
0.672
Aquca_035_00057
Aquilegia coerulea
Aquca_035_00057
I
0.811
SRM1
Arabidopsis thaliana
AT5G08520
D
0.713
Bo2g009130
Brassica oleracea
Bo2g009130
I
0.682
Bo3g004970
Brassica oleracea
Bo3g004970
I
0.682
Bo9g174380
Brassica oleracea
Bo9g174380
I
0.665
Bostr.13129s0103
Boechera stricta
Bostr.13129s0103
I
0.701
Bra028654
Brassica rapa
Bra028654
I
0.671
Cagra.1365s0066
Capsella grandiflora
Cagra.1365s0066
I
0.743
Carubv10001525m.g
Capsella rubella
Carubv10001525m.g
I
0.743
cassava18614.valid.m1
Manihot esculenta
cassava18614.valid.m1
I
0.813
Ca_05454
Cicer arietinum
Ca_05454
I
0.665
Ca_19000
Cicer arietinum
Ca_19000
I
0.740
Ciclev10032259m.g
Citrus clementina
Ciclev10032259m.g
I
0.837
Cla020348
Citrullus lanatus
Cla020348
I
0.753
Cucsa.013870
Cucumis sativus
Cucsa.013870
I
0.905
Cucsa.280970
Cucumis sativus
Cucsa.280970
I
0.771
Eucgr.G02591
Eucalyptus grandis
Eucgr.G02591
I
0.771
Eucgr.J00349
Eucalyptus grandis
Eucgr.J00349
N
0.729
evm.TU.supercontig_138.5
Carica papaya
evm.TU.supercontig_138.5
I
0.797
e_gw1.256.18.1
Physcomitrella patens
e_gw1.256.18.1
N
0.665
fgenesh2_kg.6__825__AT5G08520.1
Arabidopsis lyrata
fgenesh2_kg.6__825__AT5G08520.1
I
0.708
gene00786-v1.0-hybrid
Fragaria vesca
gene00786-v1.0-hybrid
N
0.733
gene23544-v1.0-hybrid
Fragaria vesca
gene23544-v1.0-hybrid
I
0.688
GLYMA07G28310
Glycine max
GLYMA07G28310
I
0.826
GLYMA08G40020
Glycine max
GLYMA08G40020
I
0.819
GLYMA10G42450
Glycine max
GLYMA10G42450
I
0.665
GLYMA18G18140
Glycine max
GLYMA18G18140
I
0.819
GLYMA20G01450
Glycine max
GLYMA20G01450
I
0.831
GLYMA20G24600
Glycine max
GLYMA20G24600
I
0.665
Gorai.005G212900
Gossypium raimondii
Gorai.005G212900
I
0.798
Gorai.008G147400
Gossypium raimondii
Gorai.008G147400
I
0.798
Gorai.012G135600
Gossypium raimondii
Gorai.012G135600
I
0.819
Gorai.013G067600
Gossypium raimondii
Gorai.013G067600
I
0.789
GRMZM2G149958
Zea mays
GRMZM2G149958
I
0.669
GSMUA_Achr10G06880_001
Musa acuminata
GSMUA_Achr10G06880_001
N
0.728
GSMUA_Achr1G17730_001
Musa acuminata
GSMUA_Achr1G17730_001
I
0.817
GSMUA_Achr9G20620_001
Musa acuminata
GSMUA_Achr9G20620_001
I
0.805
GSMUA_Achr9G23760_001
Musa acuminata
GSMUA_Achr9G23760_001
I
0.775
gw1.13.182.1
Physcomitrella patens
gw1.13.182.1
N
0.665
Lus10013447.g
Linum usitatissimum
Lus10013447.g
I
0.739
Lus10041001.g
Linum usitatissimum
Lus10041001.g
N
0.721
MDP0000289018
Malus domestica
MDP0000289018
I
0.663
mgf009460m
Mimulus guttatus
mgf009460m
I
0.724
MTR_1g111830
Medicago truncatula
MTR_1g111830
I
0.675
OB04G36550
Oryza brachyantha
OB04G36550
N
0.663
orange1.1g022439m.g
Citrus sinensis
orange1.1g022439m.g
I
0.837
Pavir.Ga00233
Panicum virgatum
Pavir.Ga00233
N
0.693
Pavir.Gb00055
Panicum virgatum
Pavir.Gb00055
N
0.703
PGSC0003DMG400025303
Solanum tuberosum
PGSC0003DMG400025303
I
0.714
PK13672.1
Cannabis sativa
PK13672.1
I
0.766
Pm006046
Prunus mume
Pm006046
I
0.814
Pm017050
Prunus mume
Pm017050
I
0.688
PRUPE_ppa009396mg
Prunus persica
PRUPE_ppa009396mg
I
0.852
PRUPE_ppa010926mg
Prunus persica
PRUPE_ppa010926mg
I
0.688
SapurV1A.0234s0050
Salix purpurea
SapurV1A.0234s0050
I
0.824
SapurV1A.0333s0040
Salix purpurea
SapurV1A.0333s0040
I
0.805
Sb06g032880
Sorghum bicolor
Sb06g032880
N
0.669
Si022762m.g
Setaria italica
Si022762m.g
N
0.698
Solyc04g008870.2
Solanum lycopersicum
Solyc04g008870.2
N
0.680
TCM_007672
Theobroma cacao
TCM_007672
I
0.798
Thhalv10014203m.g
Eutrema salsugineum
Thhalv10014203m.g
I
0.713
VIT_10s0071g00660
Vitis vinifera
VIT_10s0071g00660
I
0.813