30170.m013698 (Ricinus communis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 30170.m013698 T283905_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.805 0.892
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.801 0.882
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.801 0.882
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.801 0.882
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.784 0.871
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.784 0.871
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.784 0.871
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.759 0.849
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.759 0.849
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.759 0.849
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.759 0.849
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.759 0.849
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.701 0.763
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.666 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30170.m013698 Myb 16 62
30170.m013698 Myb 68 113

Links

Other Myb/SANT family TFs
Other Ricinus communis TFs

319 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29843.m000288 Ricinus communis 29843.m000288 N 0.000
Aquca_018_00160 Aquilegia coerulea Aquca_018_00160 N 0.000
MBD2 Arabidopsis thaliana AT5G35330 N 0.000
Bo8g030620 Brassica oleracea Bo8g030620 N 0.000
Bostr.29044s0085 Boechera stricta Bostr.29044s0085 N 0.000
Bra038936 Brassica rapa Bra038936 N 0.000
BRADI1G34320 Brachypodium distachyon BRADI1G34320 N 0.000
cassava11725.valid.m1 Manihot esculenta cassava11725.valid.m1 N 0.000
Ca_15552 Cicer arietinum Ca_15552 N 0.000
Ca_15553 Cicer arietinum Ca_15553 N 0.000
chr2.CM0373.530.nc Lotus japonicus chr2.CM0373.530.nc N 0.000
Ciclev10008843m.g Citrus clementina Ciclev10008843m.g N 0.000
Cla005887 Citrullus lanatus Cla005887 N 0.000
Eucgr.C00067 Eucalyptus grandis Eucgr.C00067 N 0.000
evm.TU.supercontig_115.32 Carica papaya evm.TU.supercontig_115.32 N 0.000
gene12231-v1.0-hybrid Fragaria vesca gene12231-v1.0-hybrid N 0.000
GLYMA01G00520 Glycine max GLYMA01G00520 N 0.000
GLYMA07G15620 Glycine max GLYMA07G15620 N 0.000
Gorai.009G001500 Gossypium raimondii Gorai.009G001500 N 0.000
GSMUA_Achr3G05490_001 Musa acuminata GSMUA_Achr3G05490_001 N 0.000
GSMUA_Achr9G14080_001 Musa acuminata GSMUA_Achr9G14080_001 N 0.000
Lus10017146.g Linum usitatissimum Lus10017146.g N 0.000
Lus10021593.g Linum usitatissimum Lus10021593.g N 0.000
MDP0000222923 Malus domestica MDP0000222923 N 0.000
mgf002635m Mimulus guttatus mgf002635m N 0.000
MTR_6g093020 Medicago truncatula MTR_6g093020 N 0.000
orange1.1g019505m.g Citrus sinensis orange1.1g019505m.g N 0.000
PGSC0003DMG400013699 Solanum tuberosum PGSC0003DMG400013699 N 0.000
Pm008965 Prunus mume Pm008965 N 0.000
POPTR_0018s14340 Populus trichocarpa POPTR_0018s14340 N 0.000
PRUPE_ppa008652mg Prunus persica PRUPE_ppa008652mg N 0.000
SapurV1A.0001s2550 Salix purpurea SapurV1A.0001s2550 N 0.000
MBD02 Arabidopsis lyrata scaffold_703403.1 N 0.000
Solyc05g047450.1 Solanum lycopersicum Solyc05g047450.1 N 0.000
TCM_039691 Theobroma cacao TCM_039691 N 0.000
Thhalv10003457m.g Eutrema salsugineum Thhalv10003457m.g N 0.000
MBD02 Vitis vinifera VIT_11s0065g01010 N 0.000