Cucsa.013870 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.013870 T284351_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.713 0.826
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.713 0.826
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.713 0.826
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.013870.1 Myb 9 58
Cucsa.013870.1 Myb 122 167
Cucsa.013870.2 Myb 9 58
Cucsa.013870.2 Myb 122 167
Cucsa.013870.3 Myb 9 58
Cucsa.013870.3 Myb 122 167
Cucsa.013870.4 Myb 9 58
Cucsa.013870.4 Myb 122 167
Cucsa.013870.5 Myb 9 58
Cucsa.013870.5 Myb 122 167

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29661.m000923 Ricinus communis 29661.m000923 N 0.000
Aquca_060_00005 Aquilegia coerulea Aquca_060_00005 N 0.000
cassava32963.m1 Manihot esculenta cassava32963.m1 N 0.000
cassava7505.valid.m1 Manihot esculenta cassava7505.valid.m1 N 0.000
Ca_02226 Cicer arietinum Ca_02226 N 0.000
Ca_09352 Cicer arietinum Ca_09352 N 0.000
chr2.CM0168.260.nc Lotus japonicus chr2.CM0168.260.nc N 0.000
Ciclev10025470m.g Citrus clementina Ciclev10025470m.g N 0.000
Cla014238 Citrullus lanatus Cla014238 N 0.000
Cucsa.103160 Cucumis sativus Cucsa.103160 N 0.000
Eucgr.I00704 Eucalyptus grandis Eucgr.I00704 N 0.000
evm.TU.supercontig_6.17 Carica papaya evm.TU.supercontig_6.17 N 0.000
gene05757-v1.0-hybrid Fragaria vesca gene05757-v1.0-hybrid N 0.000
GLYMA01G40180 Glycine max GLYMA01G40180 N 0.000
GLYMA05G22460 Glycine max GLYMA05G22460 N 0.000
GLYMA11G05110 Glycine max GLYMA11G05110 N 0.000
GLYMA17G17400 Glycine max GLYMA17G17400 N 0.000
Gorai.003G030400 Gossypium raimondii Gorai.003G030400 N 0.000
Gorai.007G223500 Gossypium raimondii Gorai.007G223500 N 0.000
Gorai.008G083500 Gossypium raimondii Gorai.008G083500 N 0.000
MDP0000165587 Malus domestica MDP0000165587 N 0.000
MDP0000171602 Malus domestica MDP0000171602 N 0.000
MDP0000687763 Malus domestica MDP0000687763 N 0.000
MDP0000822651 Malus domestica MDP0000822651 N 0.000
MDP0000840369 Malus domestica MDP0000840369 N 0.000
MTR_4g097080 Medicago truncatula MTR_4g097080 N 0.000
MTR_5g015490 Medicago truncatula MTR_5g015490 N 0.000
orange1.1g035867m.g Citrus sinensis orange1.1g035867m.g N 0.000
PGSC0003DMG400021444 Solanum tuberosum PGSC0003DMG400021444 N 0.000
PK04147.1 Cannabis sativa PK04147.1 N 0.000
Pm002381 Prunus mume Pm002381 N 0.000
SHR Populus trichocarpa POPTR_0012s06430 N 0.000
PRUPE_ppa004454mg Prunus persica PRUPE_ppa004454mg N 0.000
SapurV1A.0461s0030 Salix purpurea SapurV1A.0461s0030 N 0.000
Solyc02g092370.1 Solanum lycopersicum Solyc02g092370.1 N 0.000
SHR Vitis vinifera VIT_07s0129g00030 N 0.000