Cucsa.395890 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.395890 T284566_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.797 0.903
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.772 0.871
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.772 0.871
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.768 0.882
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.768 0.882
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.768 0.882
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.741 0.871
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.708 0.849
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.708 0.849
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.708 0.849
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.708 0.849
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.708 0.849
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.688 0.774
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.666 0.763
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.662 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.395890.1 Myb 12 58
Cucsa.395890.1 Myb 64 109

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

308 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aqu1.219264 Amphimedon queenslandica Aqu1.219264 I 0.000
Aqu1.224794 Amphimedon queenslandica Aqu1.224794 I 0.000
DAPPUDRAFT_50068 Daphnia pulex DAPPUDRAFT_50068 I 0.000
ENSACAG00000003119 Anolis carolinensis ENSACAG00000003119 I 0.000
ENSAMXG00000000331 Astyanax mexicanus ENSAMXG00000000331 I 0.000
ENSAPLG00000006681 Anas platyrhynchos ENSAPLG00000006681 I 0.000
klf13 Danio rerio ENSDARG00000061368 I 0.000
ENSGACG00000010739 Gasterosteus aculeatus ENSGACG00000010739 I 0.000
zgc:153115 Gasterosteus aculeatus ENSGACG00000016005 I 0.000
ENSGMOG00000002059 Gadus morhua ENSGMOG00000002059 I 0.000
ENSGMOG00000017987 Gadus morhua ENSGMOG00000017987 I 0.000
ENSLOCG00000014806 Lepisosteus oculatus ENSLOCG00000014806 I 0.000
ENSONIG00000015310 Oreochromis niloticus ENSONIG00000015310 I 0.000
klf13 Oryzias latipes ENSORLG00000007542 I 0.000
ENSPFOG00000004556 Poecilia formosa ENSPFOG00000004556 I 0.000
ENSPFOG00000016517 Poecilia formosa ENSPFOG00000016517 N 0.000
ENSPSIG00000014849 Pelodiscus sinensis ENSPSIG00000014849 I 0.000
zgc:153115 Tetraodon nigroviridis ENSTNIG00000007828 I 0.000
zgc:153115 Takifugu rubripes ENSTRUG00000003801 I 0.000
ENSXMAG00000003301 Xiphophorus maculatus ENSXMAG00000003301 I 0.000
ENSXMAG00000004532 Xiphophorus maculatus ENSXMAG00000004532 N 0.000
HHAL008603-PA Halyomorpha halys HHAL008603-PA N 0.000
LotgiG100140 Lottia gigantea LotgiG100140 I 0.000
Ogr16901 Ophisaurus gracilis Ogr16901 I 0.000
Pvit_17363 Pogona vitticeps Pvit_17363 I 0.000
TriadG8990 Trichoplax adhaerens TriadG8990 N 0.000