Cagra.0342s0017 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0342s0017 T285947_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.909 1.000
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.909 1.000
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.909 1.000
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.833 0.903
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.833 0.903
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.833 0.903
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.833 0.903
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.833 0.903
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.798 0.849
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.798 0.839
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.798 0.839
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.785 0.860
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.684 0.785
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.679 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0342s0017.1.p Myb 6 52
Cagra.0342s0017.1.p Myb 58 103

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

324 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006616 Calypte anna Aan_R006616 I 0.000
Afo_R014628 Aptenodytes forsteri Afo_R014628 I 0.000
Alligator_sinensis_CCG012951.1 Alligator sinensis Alligator_sinensis_CCG012951.1 I 0.000
B5DE03 Xenopus tropicalis B5DE03 I 0.000
B7ZSG3 Xenopus laevis B7ZSG3 I 0.000
ENSACAG00000002480 Anolis carolinensis ENSACAG00000002480 I 0.000
ENSAMEG00000006957 Ailuropoda melanoleuca ENSAMEG00000006957 I 0.000
ENSAMXG00000013017 Astyanax mexicanus ENSAMXG00000013017 I 0.000
ENSAPLG00000005775 Anas platyrhynchos ENSAPLG00000005775 I 0.000
WT1 Bos taurus ENSBTAG00000047268 I 0.000
WT1 Canis familiaris ENSCAFG00000007426 I 0.000
WT1 Choloepus hoffmanni ENSCHOG00000006244 I 0.000
WT1 Callithrix jacchus ENSCJAG00000005900 I 0.000
ENSCSAG00000005257 Chlorocebus sabaeus ENSCSAG00000005257 I 0.000
wt1b Danio rerio ENSDARG00000007990 I 0.000
wt1a Danio rerio ENSDARG00000031420 I 0.000
WT1 Dasypus novemcinctus ENSDNOG00000003652 I 0.000
Wt1 Dipodomys ordii ENSDORG00000013725 I 0.000
ENSECAG00000022308 Equus caballus ENSECAG00000022308 I 0.000
ENSEEUG00000007221 Erinaceus europaeus ENSEEUG00000007221 I 0.000
WT1 Echinops telfairi ENSETEG00000000684 I 0.000
ENSFALG00000010820 Ficedula albicollis ENSFALG00000010820 I 0.000
WT1 Felis catus ENSFCAG00000000308 I 0.000
WT1 Homo sapiens ENSG00000184937 D 0.000
wt1b Gasterosteus aculeatus ENSGACG00000016020 I 0.000
WT1 Gallus gallus ENSGALG00000012115 I 0.000
WT1 Gorilla gorilla ENSGGOG00000011586 I 0.000
ENSGMOG00000012296 Gadus morhua ENSGMOG00000012296 I 0.000
ENSLACG00000016378 Latimeria chalumnae ENSLACG00000016378 I 0.000
WT1 Loxodonta africana ENSLAFG00000006160 I 0.000
ENSLOCG00000004537 Lepisosteus oculatus ENSLOCG00000004537 I 0.000
ENSMGAG00000001489 Meleagris gallopavo ENSMGAG00000001489 I 0.000
WT1 Microcebus murinus ENSMICG00000004097 I 0.000
WT1 Myotis lucifugus ENSMLUG00000027523 I 0.000
WT1 Macaca mulatta ENSMMUG00000009881 I 0.000
WT1 Monodelphis domestica ENSMODG00000009646 I 0.000
ENSMPUG00000011307 Mustela putorius furo ENSMPUG00000011307 I 0.000
Wt1 Mus musculus ENSMUSG00000016458 D 0.000
ENSNLEG00000017890 Nomascus leucogenys ENSNLEG00000017890 I 0.000
ENSOANG00000015147 Ornithorhynchus anatinus ENSOANG00000015147 I 0.000
ENSOARG00000016334 Ovis aries ENSOARG00000016334 I 0.000
WT1 Oryctolagus cuniculus ENSOCUG00000005882 I 0.000
WT1 Otolemur garnettii ENSOGAG00000007118 I 0.000
ENSONIG00000005545 Oreochromis niloticus ENSONIG00000005545 I 0.000
ENSONIG00000011043 Oreochromis niloticus ENSONIG00000011043 I 0.000
ENSOPRG00000015709 Ochotona princeps ENSOPRG00000015709 I 0.000
wt1 Oryzias latipes ENSORLG00000009859 I 0.000
wt1 Oryzias latipes ENSORLG00000012424 I 0.000
ENSP00000331327 Macaca fascicularis ENSP00000331327 I 0.000
ENSP00000331327-D1 Bos grunniens ENSP00000331327-D1 I 0.000
ENSPANG00000019482 Papio anubis ENSPANG00000019482 I 0.000
WT1 Procavia capensis ENSPCAG00000002213 I 0.000
ENSPFOG00000010572 Poecilia formosa ENSPFOG00000010572 I 0.000
ENSPMAG00000008950 Petromyzon marinus ENSPMAG00000008950 I 0.000
ENSPPYG00000029822 Pongo abelii ENSPPYG00000029822 I 0.000
ENSPSIG00000013679 Pelodiscus sinensis ENSPSIG00000013679 I 0.000
WT1 Pan troglodytes ENSPTRG00000003476 I 0.000
Wt1 Rattus norvegicus ENSRNOG00000013074 I 0.000
ENSSARG00000000207 Sorex araneus ENSSARG00000000207 I 0.000
ENSSHAG00000017390 Sarcophilus harrisii ENSSHAG00000017390 I 0.000
WT1 Sus scrofa ENSSSCG00000013316 I 0.000
ENSSTOG00000023716 Ictidomys tridecemlineatus ENSSTOG00000023716 I 0.000
WT1 Taeniopygia guttata ENSTGUG00000004906 I 0.000
wt1b Tetraodon nigroviridis ENSTNIG00000013806 I 0.000
wt1b Takifugu rubripes ENSTRUG00000006559 I 0.000
ENSVPAG00000007788 Vicugna pacos ENSVPAG00000007788 I 0.000
ENSXMAG00000005139 Xiphophorus maculatus ENSXMAG00000005139 I 0.000
fgenesh2_pg.scaffold_80000039 Branchiostoma floridae fgenesh2_pg.scaffold_80000039 I 0.000
fgenesh2_pm.scaffold_110000013 Branchiostoma floridae fgenesh2_pm.scaffold_110000013 I 0.000
Gfo_R001970 Geospiza fortis Gfo_R001970 I 0.000
Pvit_09510 Pogona vitticeps Pvit_09510 I 0.000
wt1 Xenopus tropicalis XB-GENE-484999 I 0.000
wt1.L Xenopus laevis XB-GENE-6252376 I 0.000
wt1.S Xenopus laevis XB-GENE-864792 I 0.000