Cagra.23492s0001 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.23492s0001 T286086_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.816 0.903
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.816 0.903
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.816 0.903
MYB61
M07002_2.00 		Arabidopsis thaliana
HNYAMCHACCDNHNH
DNDNHGGTDGKTRND		 Dap-seq
OMalley et al.(2016)
MYB61_col_a 		0.779 0.871
MYB61
M07003_2.00 		Arabidopsis thaliana
NHNYACCWAMCDH
DHGKTWGGTRNDN		 Dap-seq
OMalley et al.(2016)
MYB61_colamp_a 		0.779 0.871
MYB83
M01073_2.00 		Arabidopsis thaliana
YACCHACC
GGTDGGTR		 PBM
Sullivan et al.(2014)
pTH7140 		0.719 0.753
MYB83
M07066_2.00 		Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR		 Dap-seq
OMalley et al.(2016)
MYB83_col_a 		0.719 0.753
MYB83
M07067_2.00 		Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN		 Dap-seq
OMalley et al.(2016)
MYB83_colamp_a 		0.719 0.753
MYB46
M00877_2.00 		Arabidopsis thaliana
NAMCNDHHN
NDDHNGKTN		 PBM
Franco-Zorrilla et al.(2014)
MYB46 		0.702 0.774
MYB46
M11046_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB46_Q6 		0.702 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.23492s0001.1.p Myb 14 61
Cagra.23492s0001.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

874 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AFUN000238 Anopheles funestus AFUN000238 I
AMAG_10906 Allomyces macrogynus AMAG_10906 I
AMAG_11503 Allomyces macrogynus AMAG_11503 I
AMEM010415 Anopheles merus AMEM010415 I
E5Q_01806 Mixia osmundae E5Q_01806 I
EBI_21706 Enterocytozoon bieneusi EBI_21706 I
ENSOCUG00000029369 Oryctolagus cuniculus ENSOCUG00000029369 I
ENSOPRG00000003187 Ochotona princeps ENSOPRG00000003187 I
estExt_fgeneshPB_pg.C_40740 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_40740 I
GLOINDRAFT_4254 Rhizophagus irregularis GLOINDRAFT_4254 I
GLOTRDRAFT_92391 Gloeophyllum trabeum GLOTRDRAFT_92391 I
KAFR_0A06770 Kazachstania africana KAFR_0A06770 I
KUCA_T00003449001 Kuraishia capsulata KUCA_T00003449001 I
M408DRAFT_258951 Serendipita vermifera M408DRAFT_258951 I
ML05006a Mnemiopsis leidyi ML05006a I
PHSY_003535 Pseudozyma hubeiensis PHSY_003535 I
PIIN_02203 Piriformospora indica PIIN_02203 I
PSEUBRA_SCAF12g01810 Pseudozyma brasiliensis PSEUBRA_SCAF12g01810 I
RO3G_08755 Rhizopus oryzae RO3G_08755 I
sr15806 Sporisorium reilianum sr15806 I
UHOR_07039 Ustilago hordei UHOR_07039 I
UM04928 Ustilago maydis UM04928 D