CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.4961s0006
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.4961s0006
T286161_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB23
M07133_2.00
Arabidopsis thaliana
HCAACWAHHHH
DDDDTWGTTGD
Dap-seq
OMalley et al.(2016)
MYB23_col_a
0.755
0.903
WER
M11047_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01
0.742
0.903
WER
M11048_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2
0.742
0.903
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.4961s0006.1.p
Myb
16
63
KGLWTVEEDNILMDYVLTHGTGQWNRIVRKTGLKRCGKSCRLRWMNYL
Cagra.4961s0006.1.p
Myb
69
114
KGTFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_002_00170
Aquilegia coerulea
Aquca_002_00170
I
0.705
Aquca_025_00333
Aquilegia coerulea
Aquca_025_00333
I
0.707
GL1
Arabidopsis thaliana
AT3G27920
I
0.863
WER
Arabidopsis thaliana
AT5G14750
D
0.742
MYB23
Arabidopsis thaliana
AT5G40330
D
0.755
Bo2g012170
Brassica oleracea
Bo2g012170
I
0.742
Bo7g090950
Brassica oleracea
Bo7g090950
I
0.812
Bo9g165670
Brassica oleracea
Bo9g165670
I
0.725
Bostr.0556s0467
Boechera stricta
Bostr.0556s0467
I
0.884
Bostr.1460s0063
Boechera stricta
Bostr.1460s0063
I
0.719
Bostr.2902s0211
Boechera stricta
Bostr.2902s0211
I
0.742
Bostr.7200s0005
Boechera stricta
Bostr.7200s0005
I
0.755
Bra008740
Brassica rapa
Bra008740
I
0.725
Bra023486
Brassica rapa
Bra023486
I
0.701
Bra025311
Brassica rapa
Bra025311
I
0.833
Bra025589
Brassica rapa
Bra025589
I
0.755
Bra039065
Brassica rapa
Bra039065
I
0.705
Cagra.3160s0003
Capsella grandiflora
Cagra.3160s0003
I
0.755
Cagra.3166s0078
Capsella grandiflora
Cagra.3166s0078
I
0.742
Carubv10001990m.g
Capsella rubella
Carubv10001990m.g
I
0.742
Carubv10005698m.g
Capsella rubella
Carubv10005698m.g
I
0.755
Carubv10018791m.g
Capsella rubella
Carubv10018791m.g
I
0.909
cassava26193.m1
Manihot esculenta
cassava26193.m1
I
0.719
cassava27350.m1
Manihot esculenta
cassava27350.m1
I
0.680
Ciclev10017556m.g
Citrus clementina
Ciclev10017556m.g
I
0.709
Ciclev10032713m.g
Citrus clementina
Ciclev10032713m.g
I
0.676
Eucgr.B00373
Eucalyptus grandis
Eucgr.B00373
I
0.683
Eucgr.I01791
Eucalyptus grandis
Eucgr.I01791
I
0.762
Eucgr.J02212
Eucalyptus grandis
Eucgr.J02212
I
0.703
evm.TU.supercontig_124.57
Carica papaya
evm.TU.supercontig_124.57
I
0.674
evm.TU.supercontig_46.32
Carica papaya
evm.TU.supercontig_46.32
I
0.662
GL1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5000559
I
0.863
WER
Arabidopsis lyrata
fgenesh2_kg.6__1454__AT5G14750.1
I
0.742
gene31098-v1.0-hybrid
Fragaria vesca
gene31098-v1.0-hybrid
I
0.663
Gorai.007G001800
Gossypium raimondii
Gorai.007G001800
I
0.682
Gorai.012G061800
Gossypium raimondii
Gorai.012G061800
I
0.733
LjT16O05.150.nd
Lotus japonicus
LjT16O05.150.nd
I
0.662
MDP0000164048
Malus domestica
MDP0000164048
I
0.668
MDP0000199965
Malus domestica
MDP0000199965
I
0.664
MDP0000537324
Malus domestica
MDP0000537324
I
0.676
MDP0000578193
Malus domestica
MDP0000578193
I
0.716
MDP0000650225
Malus domestica
MDP0000650225
I
0.699
mgf023205m
Mimulus guttatus
mgf023205m
I
0.678
orange1.1g047269m.g
Citrus sinensis
orange1.1g047269m.g
I
0.724
Pm006678
Prunus mume
Pm006678
I
0.668
Pm024725
Prunus mume
Pm024725
I
0.726
POPTR_0012s08190
Populus trichocarpa
POPTR_0012s08190
I
0.686
POPTR_0015s08680
Populus trichocarpa
POPTR_0015s08680
I
0.669
PRUPE_ppa010908mg
Prunus persica
PRUPE_ppa010908mg
I
0.711
PRUPE_ppa014884mg
Prunus persica
PRUPE_ppa014884mg
I
0.668
SapurV1A.1178s0050
Salix purpurea
SapurV1A.1178s0050
I
0.708
SapurV1A.1404s0020
Salix purpurea
SapurV1A.1404s0020
I
0.681
TCM_010360
Theobroma cacao
TCM_010360
I
0.665
TCM_012057
Theobroma cacao
TCM_012057
I
0.716
TCM_016886
Theobroma cacao
TCM_016886
I
0.776
Thhalv10005428m.g
Eutrema salsugineum
Thhalv10005428m.g
I
0.794
Thhalv10014715m.g
Eutrema salsugineum
Thhalv10014715m.g
I
0.742
Thhalv10028340m.g
Eutrema salsugineum
Thhalv10028340m.g
I
0.771
VIT_01s0127g00730
Vitis vinifera
VIT_01s0127g00730
I
0.682
VIT_14s0066g01220
Vitis vinifera
VIT_14s0066g01220
I
0.735
VIT_17s0000g08480
Vitis vinifera
VIT_17s0000g08480
I
0.699