Lus10016413.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10016413.g T287991_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB83
M01073_2.00 		Arabidopsis thaliana
YACCHACC
GGTDGGTR		 PBM
Sullivan et al.(2014)
pTH7140 		0.709 0.774
MYB83
M07066_2.00 		Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR		 Dap-seq
OMalley et al.(2016)
MYB83_col_a 		0.709 0.774
MYB83
M07067_2.00 		Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN		 Dap-seq
OMalley et al.(2016)
MYB83_colamp_a 		0.709 0.774
MYB46
M00877_2.00 		Arabidopsis thaliana
NAMCNDHHN
NDDHNGKTN		 PBM
Franco-Zorrilla et al.(2014)
MYB46 		0.704 0.742
MYB46
M11046_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB46_Q6 		0.704 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10016413 Myb 14 64
Lus10016413 Myb 70 115

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

234 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA005293 Oryza indica BGIOSGA005293 N 0.000
BRADI1G29920 Brachypodium distachyon BRADI1G29920 N 0.000
BRADI3G60870 Brachypodium distachyon BRADI3G60870 N 0.000
GRMZM2G073892 Zea mays GRMZM2G073892 N 0.000
GRMZM2G402862 Zea mays GRMZM2G402862 N 0.000
LPERR02G31960 Leersia perrieri LPERR02G31960 N 0.000
MLOC_14243 Hordeum vulgare MLOC_14243 N 0.000
OBART02G38520 Oryza barthii OBART02G38520 N 0.000
OGLUM02G39710 Oryza glumaepatula OGLUM02G39710 N 0.000
OLONG_006885 Oryza longistaminata OLONG_006885 N 0.000
OMERI02G36320 Oryza meridionalis OMERI02G36320 N 0.000
ONIVA02G41380 Oryza nivara ONIVA02G41380 N 0.000
OPUNC02G35740 Oryza punctata OPUNC02G35740 N 0.000
OPUNC06G25350 Oryza punctata OPUNC06G25350 N 0.000
ORGLA02G0337900 Oryza glaberrima ORGLA02G0337900 N 0.000
ORGLA06G0234600 Oryza glaberrima ORGLA06G0234600 N 0.000
ORUFI02G40230 Oryza rufipogon ORUFI02G40230 N 0.000
OS02G0833600 Oryza sativa OS02G0833600 N 0.000
OS06G0719500 Oryza sativa OS06G0719500 N 0.000
OS06G0720900 Oryza sativa OS06G0720900 N 0.000
OS06G0724000 Oryza sativa OS06G0724000 N 0.000
Pavir.J00689 Panicum virgatum Pavir.J00689 N 0.000
Pavir.J01346 Panicum virgatum Pavir.J01346 N 0.000
Pavir.J04759 Panicum virgatum Pavir.J04759 N 0.000
Sb04g038600 Sorghum bicolor Sb04g038600 N 0.000
Sb10g030400 Sorghum bicolor Sb10g030400 N 0.000
Si007412m.g Setaria italica Si007412m.g N 0.000
Si023448m.g Setaria italica Si023448m.g N 0.000
Traes_7AL_3ED7A9663 Triticum aestivum Traes_7AL_3ED7A9663 N 0.000
Traes_7DL_EECCC4DBF Triticum aestivum Traes_7DL_EECCC4DBF N 0.000