Pavir.Ca02612 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ca02612 T289069_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CDC5
M02698_2.00 		Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN		 SELEX
Mathelier et al.(2014)
MA0579.1 		0.909 0.978
CDC5
M11037_2.00 		Arabidopsis thaliana
NVCGCTGAGBN
NVCTCAGCGBN		 Transfac
Matys et al.(2006)
P$CDC5_01 		0.909 0.978
CDC5L
M11049_2.00 		Homo sapiens
GWKTTAAYRTAD
HTAYRTTAAMWC		 Transfac
Matys et al.(2006)
V$CDC5_01 		0.814 0.870
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca02612.1.p Myb 7 53
Pavir.Ca02612.1.p Myb 59 103

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

574 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000496 Ailuropoda melanoleuca ENSAMEG00000000496 N 0.000
THAP2 Bos taurus ENSBTAG00000012271 N 0.000
ENSBTAP00000016276-D2 Bos grunniens ENSBTAP00000016276-D2 N 0.000
THAP2 Canis familiaris ENSCAFG00000000456 N 0.000
THAP2 Callithrix jacchus ENSCJAG00000001382 N 0.000
THAP2 Cavia porcellus ENSCPOG00000009524 N 0.000
ENSCSAG00000004092 Chlorocebus sabaeus ENSCSAG00000004092 N 0.000
ENSDNOG00000049696 Dasypus novemcinctus ENSDNOG00000049696 N 0.000
Thap2 Dipodomys ordii ENSDORG00000006270 N 0.000
THAP2 Homo sapiens ENSG00000173451 N 0.000
THAP2 Gorilla gorilla ENSGGOG00000015483 N 0.000
ENSLACG00000005196 Latimeria chalumnae ENSLACG00000005196 N 0.000
ENSMEUG00000015495 Macropus eugenii ENSMEUG00000015495 N 0.000
THAP2 Myotis lucifugus ENSMLUG00000004164 N 0.000
ENSMMUG00000020946 Macaca mulatta ENSMMUG00000020946 N 0.000
ENSMMUP00000027563 Macaca fascicularis ENSMMUP00000027563 N 0.000
ENSMPUG00000017487 Mustela putorius furo ENSMPUG00000017487 N 0.000
ENSMPUG00000019081 Mustela putorius furo ENSMPUG00000019081 N 0.000
Thap2 Mus musculus ENSMUSG00000020137 N 0.000
ENSNLEG00000004398 Nomascus leucogenys ENSNLEG00000004398 N 0.000
ENSOARG00000014616 Ovis aries ENSOARG00000014616 N 0.000
THAP2 Oryctolagus cuniculus ENSOCUG00000013308 N 0.000
THAP2 Ochotona princeps ENSOPRG00000013944 N 0.000
THAP2 Procavia capensis ENSPCAG00000003970 N 0.000
ENSPPYG00000004774 Pongo abelii ENSPPYG00000004774 N 0.000
ENSPSIG00000012990 Pelodiscus sinensis ENSPSIG00000012990 N 0.000
THAP2 Pan troglodytes ENSPTRG00000005225 N 0.000
THAP2 Pteropus vampyrus ENSPVAG00000012359 N 0.000
Thap2 Rattus norvegicus ENSRNOG00000003993 N 0.000
THAP2 Sorex araneus ENSSARG00000010362 N 0.000
THAP2 Sus scrofa ENSSSCG00000021270 N 0.000
ENSSTOG00000002694 Ictidomys tridecemlineatus ENSSTOG00000002694 N 0.000
THAP2 Tupaia belangeri ENSTBEG00000016924 N 0.000
ENSTSYG00000005486 Tarsius syrichta ENSTSYG00000005486 N 0.000
THAP2 Tursiops truncatus ENSTTRG00000007330 N 0.000
THAP2 Vicugna pacos ENSVPAG00000010909 N 0.000