Pavir.Fa01954 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Fa01954 T289190_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G61620
M07149_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
AT5G61620_col_a 		0.761 0.851
AT5G61620
M07150_2.00 		Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR		 Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a 		0.761 0.851
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.760 0.851
KUA1
M02312_2.00 		Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN		 PBM
Weirauch et al.(2014)
pTH7647 		0.751 0.809
KUA1
M07136_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a 		0.751 0.809
KUA1
M07137_2.00 		Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD		 Dap-seq
OMalley et al.(2016)
At5g47390_col_b 		0.751 0.809
PK00738.1
M02346_2.00 		Cannabis sativa
NYWATCYDNN
NNHRGATWRN		 PBM
Weirauch et al.(2014)
pTH9487 		0.750 0.830
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.750 0.830
AT5G56840
M07144_2.00 		Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW		 Dap-seq
OMalley et al.(2016)
AT5G56840_col_a 		0.748 0.830
AT5G56840
M07145_2.00 		Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD		 Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a 		0.748 0.830
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.742 0.787
AT3G16350
M01078_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149 		0.739 0.809
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.731 0.787
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.718 0.745
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.718 0.745
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.718 0.745
0600010132
M02360_2.00 		Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN		 PBM
Weirauch et al.(2014)
pTH9441 		0.693 0.787
AT1G74840
M02291_2.00 		Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN		 PBM
Weirauch et al.(2014)
pTH7074 		0.682 0.766
AT1G74840
M07037_2.00 		Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD		 Dap-seq
OMalley et al.(2016)
At1g74840_col100_a 		0.682 0.766
AT1G74840
M07038_2.00 		Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD		 Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a 		0.682 0.766
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa01954.1.p Myb 101 148
Pavir.Fa01954.2.p Myb 101 148
Pavir.Fa01954.3.p Myb 101 148

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

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Score		 Action
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ENSCSAG00000006712 Chlorocebus sabaeus ENSCSAG00000006712 I
zbtb3 Danio rerio ENSDARG00000036235 I
ENSDNOG00000006546 Dasypus novemcinctus ENSDNOG00000006546 I
ZBTB3 Dasypus novemcinctus ENSDNOG00000043011 I
Zbtb3 Dipodomys ordii ENSDORG00000015697 I
ZBTB3 Felis catus ENSFCAG00000027690 I
ZBTB3 Homo sapiens ENSG00000185670 I
zbtb3 Gasterosteus aculeatus ENSGACG00000016930 I
ZBTB3 Gorilla gorilla ENSGGOG00000011735 I
ENSLACG00000006879 Latimeria chalumnae ENSLACG00000006879 I
ENSLOCG00000001327 Lepisosteus oculatus ENSLOCG00000001327 I
ENSMEUG00000015659 Macropus eugenii ENSMEUG00000015659 I
ZBTB3 Microcebus murinus ENSMICG00000009961 I
ZBTB3 Myotis lucifugus ENSMLUG00000011020 I
ENSMMUG00000014369 Macaca mulatta ENSMMUG00000014369 I
ENSMODG00000007952 Monodelphis domestica ENSMODG00000007952 I
ENSMPUG00000013694 Mustela putorius furo ENSMPUG00000013694 I
Zbtb3 Mus musculus ENSMUSG00000071661 D
ENSNLEG00000004096 Nomascus leucogenys ENSNLEG00000004096 I
ENSOANG00000001309 Ornithorhynchus anatinus ENSOANG00000001309 I
ENSOARG00000016929 Ovis aries ENSOARG00000016929 I
ZBTB3 Oryctolagus cuniculus ENSOCUG00000008921 I
ZBTB3 Otolemur garnettii ENSOGAG00000011414 I
ENSONIG00000005336 Oreochromis niloticus ENSONIG00000005336 I
ENSP00000378286 Macaca fascicularis ENSP00000378286 I
ENSPANG00000008469 Papio anubis ENSPANG00000008469 I
ENSPFOG00000009453 Poecilia formosa ENSPFOG00000009453 I
ENSPPYG00000003148 Pongo abelii ENSPPYG00000003148 I
ENSPSIG00000001786 Pelodiscus sinensis ENSPSIG00000001786 I
ZBTB3 Pan troglodytes ENSPTRG00000003785 I
ZBTB3 Pteropus vampyrus ENSPVAG00000003477 I
Zbtb3 Rattus norvegicus ENSRNOG00000019461 I
ENSSSCG00000025351 Sus scrofa ENSSSCG00000025351 I
ENSSTOG00000027839 Ictidomys tridecemlineatus ENSSTOG00000027839 I
zbtb3 Tetraodon nigroviridis ENSTNIG00000003382 I
zbtb3 Takifugu rubripes ENSTRUG00000013773 I
ZBTB3 Tursiops truncatus ENSTTRG00000002477 I
ENSXMAG00000003145 Xiphophorus maculatus ENSXMAG00000003145 I
Ogr03307 Ophisaurus gracilis Ogr03307 I
Pvit_09391 Pogona vitticeps Pvit_09391 I
zbtb3 Xenopus tropicalis XB-GENE-991962 I