chr4.CM0831.100.nd (Lotus japonicus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 chr4.CM0831.100.nd T290720_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
APRR2
M02300_2.00 		Arabidopsis thaliana
NNRNWATCNN
NNGATWNYNN		 PBM
Weirauch et al.(2014)
pTH7102 		0.793 0.894
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0831.100.nd Myb 289 339

Links

Other Myb/SANT family TFs
Other Lotus japonicus TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30054.m000786 Ricinus communis 30054.m000786 I 0.787
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I 0.834
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.771
APRR2 Arabidopsis thaliana AT4G18020 D 0.793
Bo1g019180 Brassica oleracea Bo1g019180 I 0.770
Bo7g105690 Brassica oleracea Bo7g105690 I 0.770
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I 0.770
Bra012623 Brassica rapa Bra012623 I 0.770
Bra013277 Brassica rapa Bra013277 I 0.770
Bra013278 Brassica rapa Bra013278 I 0.770
Bra013279 Brassica rapa Bra013279 I 0.770
Bra036015 Brassica rapa Bra036015 I 0.669
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I 0.667
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I 0.882
Carubv10004540m.g Capsella rubella Carubv10004540m.g I 0.882
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I 0.759
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I 0.891
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I 0.891
Ca_02285 Cicer arietinum Ca_02285 I 0.901
Ca_12825 Cicer arietinum Ca_12825 I 0.909
Ca_24009 Cicer arietinum Ca_24009 I 0.834
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I 0.883
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.812
Cla008926 Citrullus lanatus Cla008926 I 0.778
Cla016403 Citrullus lanatus Cla016403 I 0.827
Cucsa.313480 Cucumis sativus Cucsa.313480 I 0.813
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.778
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.820
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I 0.752
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.793
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.812
GLYMA01G40900 Glycine max GLYMA01G40900 I 0.883
GLYMA05G06070 Glycine max GLYMA05G06070 I 0.852
GLYMA11G04441 Glycine max GLYMA11G04441 I 0.883
GLYMA17G16360 Glycine max GLYMA17G16360 I 0.889
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I 0.861
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I 0.867
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I 0.901
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I 0.667
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I 0.819
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I 0.687
GSMUA_Achr2G18200_001 Musa acuminata GSMUA_Achr2G18200_001 I 0.781
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I 0.667
LPERR01G08320 Leersia perrieri LPERR01G08320 I 0.667
Lus10003013.g Linum usitatissimum Lus10003013.g I 0.706
Lus10011044.g Linum usitatissimum Lus10011044.g I 0.759
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.739
MDP0000237396 Malus domestica MDP0000237396 I 0.814
MDP0000248863 Malus domestica MDP0000248863 I 0.764
MTR_4g098870 Medicago truncatula MTR_4g098870 I 0.902
MTR_5g014040 Medicago truncatula MTR_5g014040 I 0.867
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I 0.667
OMERI01G08840 Oryza meridionalis OMERI01G08840 I 0.667
ONIVA01G11450 Oryza nivara ONIVA01G11450 I 0.667
OPUNC01G08680 Oryza punctata OPUNC01G08680 I 0.667
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.812
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I 0.667
GLK2 Oryza sativa OS01G0239000 I 0.667
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.745
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I 0.909
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I 0.813
PK19826.1 Cannabis sativa PK19826.1 I 0.812
Pm014733 Prunus mume Pm014733 I 0.812
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I 0.716
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I 0.698
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.812
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I 0.734
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I 0.740
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I 0.704
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I 0.813
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I 0.909
TCM_015780 Theobroma cacao TCM_015780 I 0.763
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I 0.770
APRR2 Vitis vinifera VIT_02s0012g00570 I 0.759