CM0528.210.nd (Lotus japonicus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 CM0528.210.nd T290745_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.809 0.946
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.795 0.892
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.793 0.903
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.793 0.903
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.740 0.828
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.740 0.828
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.740 0.828
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.716 0.785
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.715 0.817
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.715 0.817
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.715 0.817
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.715 0.817
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.715 0.817
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.668 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CM0528.210.nd Myb 5 51
CM0528.210.nd Myb 57 102

Links

Other Myb/SANT family TFs
Other Lotus japonicus TFs

316 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30068.m002619 Ricinus communis 30068.m002619 I 0.000
AMTR_s00018p00071850 Amborella trichopoda AMTR_s00018p00071850 I 0.000
Aquca_020_00034 Aquilegia coerulea Aquca_020_00034 I 0.000
Aquca_020_00035 Aquilegia coerulea Aquca_020_00035 I 0.000
NAC014 Arabidopsis thaliana AT1G33060 I 0.000
NTL9 Arabidopsis thaliana AT4G35580 D 0.000
Bo5g086780 Brassica oleracea Bo5g086780 I 0.000
Bostr.3359s0059 Boechera stricta Bostr.3359s0059 I 0.000
Bostr.7867s1416 Boechera stricta Bostr.7867s1416 I 0.000
Bra010193 Brassica rapa Bra010193 I 0.000
Cagra.1443s0001 Capsella grandiflora Cagra.1443s0001 I 0.000
Cagra.2350s0100 Capsella grandiflora Cagra.2350s0100 I 0.000
Carubv10007613m.g Capsella rubella Carubv10007613m.g I 0.000
Carubv10008529m.g Capsella rubella Carubv10008529m.g I 0.000
cassava22173.valid.m1 Manihot esculenta cassava22173.valid.m1 I 0.000
Ciclev10019282m.g Citrus clementina Ciclev10019282m.g I 0.000
Cla002432 Citrullus lanatus Cla002432 N 0.000
Cla016588 Citrullus lanatus Cla016588 N 0.000
Cucsa.273280 Cucumis sativus Cucsa.273280 N 0.000
Eucgr.E01095 Eucalyptus grandis Eucgr.E01095 I 0.000
evm.TU.supercontig_37.112 Carica papaya evm.TU.supercontig_37.112 I 0.000
ANAC014 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002639 I 0.000
NTL9 Arabidopsis lyrata fgenesh2_kg.7__521__AT4G35580.1 I 0.000
gene01851-v1.0-hybrid Fragaria vesca gene01851-v1.0-hybrid I 0.000
Gorai.003G073300 Gossypium raimondii Gorai.003G073300 I 0.000
Gorai.008G261400 Gossypium raimondii Gorai.008G261400 I 0.000
Gorai.009G260000 Gossypium raimondii Gorai.009G260000 I 0.000
Lus10008285.g Linum usitatissimum Lus10008285.g I 0.000
Lus10010148.g Linum usitatissimum Lus10010148.g I 0.000
MDP0000146969 Malus domestica MDP0000146969 I 0.000
MDP0000169485 Malus domestica MDP0000169485 I 0.000
MDP0000266908 Malus domestica MDP0000266908 I 0.000
MDP0000658409 Malus domestica MDP0000658409 I 0.000
mgf022344m Mimulus guttatus mgf022344m I 0.000
orange1.1g009388m.g Citrus sinensis orange1.1g009388m.g I 0.000
PK02019.1 Cannabis sativa PK02019.1 I 0.000
Pm029581 Prunus mume Pm029581 I 0.000
POPTR_0001s45700 Populus trichocarpa POPTR_0001s45700 I 0.000
POPTR_0011s15230 Populus trichocarpa POPTR_0011s15230 I 0.000
PRUPE_ppa001291mg Prunus persica PRUPE_ppa001291mg I 0.000
SapurV1A.0285s0090 Salix purpurea SapurV1A.0285s0090 I 0.000
SapurV1A.0666s0060 Salix purpurea SapurV1A.0666s0060 N 0.000
TCM_015584 Theobroma cacao TCM_015584 I 0.000
Thhalv10007021m.g Eutrema salsugineum Thhalv10007021m.g I 0.000
VIT_02s0025g03020 Vitis vinifera VIT_02s0025g03020 I 0.000
VIT_16s0098g00760 Vitis vinifera VIT_16s0098g00760 I 0.000
VIT_18s0001g01820 Vitis vinifera VIT_18s0001g01820 I 0.000