CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000239523
(
Malus domestica
)
NFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01422 (zf-NF-X1)
IPR000967
MDP0000239523
T300978_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000239523
NFX
179
196
CGHHCLLLCHPGPCPSCP
MDP0000239523
NFX
231
249
CGIHRCSEICHQGPCLPCR
MDP0000239523
NFX
285
303
CGQHKCTKGCHLGECGPCP
MDP0000239523
NFX
339
358
CGYHRCPERCHRGECIETCR
MDP0000239523
NFX
392
410
CGRHACKRRCCDGDCPPCS
MDP0000239523
NFX
457
469
PHKCHYGACHPCR
MDP0000239523
NFX
478
489
CGHNCKLRCHGP
MDP0000239523
NFX
586
603
CPHPCPLPCHPGDCPPCK
MDP0000239523
NFX
649
669
CTHLCPEICHPGQCSSPEKCS
Links
Other
NFX
family TFs
Other
Malus domestica
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA023869
Oryza indica
BGIOSGA023869
N
BRADI1G61110
Brachypodium distachyon
BRADI1G61110
N
GRMZM2G017145
Zea mays
GRMZM2G017145
N
GRMZM2G350312
Zea mays
GRMZM2G350312
N
LPERR07G20030
Leersia perrieri
LPERR07G20030
N
OB07G28610
Oryza brachyantha
OB07G28610
N
OBART07G23020
Oryza barthii
OBART07G23020
N
OGLUM07G23080
Oryza glumaepatula
OGLUM07G23080
N
OLONG_009586
Oryza longistaminata
OLONG_009586
N
OMERI07G19420
Oryza meridionalis
OMERI07G19420
N
ONIVA07G22640
Oryza nivara
ONIVA07G22640
N
OPUNC07G21640
Oryza punctata
OPUNC07G21640
N
OPUNC07G21720
Oryza punctata
OPUNC07G21720
N
ORGLA07G0180200
Oryza glaberrima
ORGLA07G0180200
N
ORUFI07G24160
Oryza rufipogon
ORUFI07G24160
N
BHLH062
Oryza sativa
OS07G0628500
N
Pavir.Ba00364
Panicum virgatum
Pavir.Ba00364
N
Pavir.Bb03409
Panicum virgatum
Pavir.Bb03409
N
Pavir.Ia03149
Panicum virgatum
Pavir.Ia03149
N
Pavir.J37675
Panicum virgatum
Pavir.J37675
N
PDK_20s1715301g001
Phoenix dactylifera
PDK_20s1715301g001
N
Sb02g040140
Sorghum bicolor
Sb02g040140
N
Si037016m.g
Setaria italica
Si037016m.g
N